Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq5242 127 2e-24
seq5375 107 2e-18
>seq5242
Length=5320397
Score = 127 bits (140), Expect = 2e-24
Identities = 405/620 (65%), Gaps = 16/620 (3%)
Strand=Plus/Plus
Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTAC 16095
||| || ||||| || || || || |||| | ||| || || || || || || ||
Sbjct 3387814 ATCCGCCACAAACTCAATGTACTGGGACATCAGGTCACAGTTCATGCCGATGAGGTTCAC 3387873
Query 16096 CGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGT 16155
|| || || | ||| | || | || || || | ||||| || ||||| ||| |
Sbjct 3387874 AGGCAGGGCGTCTGTGAGGAACTCCTGCTCAATGAGCACCGCATCGCGGATGATCTCGAT 3387933
Query 16156 G----GCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACG-CGAAG 16210
| ||||| || | | || || | ||||| | ||||| || |||| |||||
Sbjct 3387934 GATGCGCTCGCGTCTGGGTCGCTGCACC----AGGTGCTGGAACATCAG-CACGGCGAAG 3387988
Query 16211 TCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATT 16270
|| || || | ||| ||||| | | ||| || |||||||| || || | || |||||
Sbjct 3387989 TCACAGTGCAATCCCTCGTCGCGGGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATC 3388048
Query 16271 TTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATATACCCT 16328
|| || ||||| | |||||| || | || || || | | ||| ||| || ||||
Sbjct 3388049 AGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAA--GAAGATGCCCT 3388106
Query 16329 CAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA-ATCCAT 16387
| || | ||||| ||||| | || ||| || | | || || | || |||||
Sbjct 3388107 CCACGGCGGCAAATGCGATGATGCGCTCCCCGAAATTGGCCGACTTGG-AGGAGATCCAG 3388165
Query 16388 TTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAAT 16447
| | |||| || || || | || | |||||| || ||||| || ||||
Sbjct 3388166 GACAGAGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTCTCGATGGCGTTGAACAGG 3388225
Query 16448 TTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAG 16507
| ||| | || ||| || || || || ||||| | |||||||| || |||
Sbjct 3388226 TACTCCCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACGCTGTACATCTCCGAG 3388285
Query 16508 TGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACT 16567
|| | |||||| ||||| ||||| || || |||||||| || ||||||| || || ||
Sbjct 3388286 TGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCCGTGATCTGCACC 3388345
Query 16568 TCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAAC 16627
||| | || || ||| ||||||||||||| ||||| || || || ||||| ||
Sbjct 3388346 TCCTGGCTGAACCGCTCCACCAGGTTCTCATTGACGATGCCATCGGAGGCGGCAAAGAAG 3388405
Query 16628 GCCAATATGTGCTTAATGAA 16647
|||| | |||| |||||
Sbjct 3388406 GCCAGCACGTGCGAGATGAA 3388425
>seq5375
Length=646746
Score = 107 bits (118), Expect = 2e-18
Identities = 180/258 (70%), Gaps = 2/258 (1%)
Strand=Plus/Minus
Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995
|||||||| || | ||| || || | || |||||||||||| | | ||||||| ||
Sbjct 627982 TTCATGTACCGAACCTTGCCGAAAATGGCGCGCTCCTTCCATCCCATATCGTGGACGCCG 627923
Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTA 119055
| | | ||| | || |||||||| ||||||||||| ||| || | ||||||
Sbjct 627922 CCGATGGACCACATGCAGCCCACGTAGCCGTTGGGATCGCGTCCATCAAGGCTGTACTTG 627863
Query 119056 TCGTTTAAGTAGATACAG-ACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAt 119114
||||||| ||| | || | | ||| |||||| || ||||||| || ||
Sbjct 627862 TCGTTTAGCAGGATCGCGTACTCC-AGCGCCAGTTCCGGCGTGGCGGTCCATTCGAGAAT 627804
Query 119115 ttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAG 119174
||||| ||||||||||| || || | |||||||| || |||||| | || ||| ||
Sbjct 627803 CTTTTTGGCCCAGTACATGCGCAAGAAGCCGTGCATCTTGCCCTCGCGCACCAGCTGCAG 627744
Query 119175 TTGTGCGGTGTTCCATAG 119192
||| || | |||||| ||
Sbjct 627743 TTGCGCCGAGTTCCACAG 627726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511379694140280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |