Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq5242 127 2e-24 seq5375 107 2e-18 >seq5242 Length=5320397 Score = 127 bits (140), Expect = 2e-24 Identities = 405/620 (65%), Gaps = 16/620 (3%) Strand=Plus/Plus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTAC 16095 ||| || ||||| || || || || |||| | ||| || || || || || || || Sbjct 3387814 ATCCGCCACAAACTCAATGTACTGGGACATCAGGTCACAGTTCATGCCGATGAGGTTCAC 3387873 Query 16096 CGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGT 16155 || || || | ||| | || | || || || | ||||| || ||||| ||| | Sbjct 3387874 AGGCAGGGCGTCTGTGAGGAACTCCTGCTCAATGAGCACCGCATCGCGGATGATCTCGAT 3387933 Query 16156 G----GCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACG-CGAAG 16210 | ||||| || | | || || | ||||| | ||||| || |||| ||||| Sbjct 3387934 GATGCGCTCGCGTCTGGGTCGCTGCACC----AGGTGCTGGAACATCAG-CACGGCGAAG 3387988 Query 16211 TCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATT 16270 || || || | ||| ||||| | | ||| || |||||||| || || | || ||||| Sbjct 3387989 TCACAGTGCAATCCCTCGTCGCGGGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATC 3388048 Query 16271 TTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATATACCCT 16328 || || ||||| | |||||| || | || || || | | ||| ||| || |||| Sbjct 3388049 AGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAA--GAAGATGCCCT 3388106 Query 16329 CAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA-ATCCAT 16387 | || | ||||| ||||| | || ||| || | | || || | || ||||| Sbjct 3388107 CCACGGCGGCAAATGCGATGATGCGCTCCCCGAAATTGGCCGACTTGG-AGGAGATCCAG 3388165 Query 16388 TTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAAT 16447 | | |||| || || || | || | |||||| || ||||| || |||| Sbjct 3388166 GACAGAGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTCTCGATGGCGTTGAACAGG 3388225 Query 16448 TTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAG 16507 | ||| | || ||| || || || || ||||| | |||||||| || ||| Sbjct 3388226 TACTCCCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACGCTGTACATCTCCGAG 3388285 Query 16508 TGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACT 16567 || | |||||| ||||| ||||| || || |||||||| || ||||||| || || || Sbjct 3388286 TGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCCGTGATCTGCACC 3388345 Query 16568 TCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAAC 16627 ||| | || || ||| ||||||||||||| ||||| || || || ||||| || Sbjct 3388346 TCCTGGCTGAACCGCTCCACCAGGTTCTCATTGACGATGCCATCGGAGGCGGCAAAGAAG 3388405 Query 16628 GCCAATATGTGCTTAATGAA 16647 |||| | |||| ||||| Sbjct 3388406 GCCAGCACGTGCGAGATGAA 3388425 >seq5375 Length=646746 Score = 107 bits (118), Expect = 2e-18 Identities = 180/258 (70%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 |||||||| || | ||| || || | || |||||||||||| | | ||||||| || Sbjct 627982 TTCATGTACCGAACCTTGCCGAAAATGGCGCGCTCCTTCCATCCCATATCGTGGACGCCG 627923 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTA 119055 | | | ||| | || |||||||| ||||||||||| ||| || | |||||| Sbjct 627922 CCGATGGACCACATGCAGCCCACGTAGCCGTTGGGATCGCGTCCATCAAGGCTGTACTTG 627863 Query 119056 TCGTTTAAGTAGATACAG-ACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAt 119114 ||||||| ||| | || | | ||| |||||| || ||||||| || || Sbjct 627862 TCGTTTAGCAGGATCGCGTACTCC-AGCGCCAGTTCCGGCGTGGCGGTCCATTCGAGAAT 627804 Query 119115 ttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAG 119174 ||||| ||||||||||| || || | |||||||| || |||||| | || ||| || Sbjct 627803 CTTTTTGGCCCAGTACATGCGCAAGAAGCCGTGCATCTTGCCCTCGCGCACCAGCTGCAG 627744 Query 119175 TTGTGCGGTGTTCCATAG 119192 ||| || | |||||| || Sbjct 627743 TTGCGCCGAGTTCCACAG 627726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511379694140280