Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5214 383 2e-101 >seq5214 Length=3698012 Score = 383 bits (424), Expect = 2e-101 Identities = 1217/1872 (65%), Gaps = 30/1872 (2%) Strand=Plus/Plus Query 52798 CTTGTCCAATGTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 52856 ||| |||| ||||| ||||| | | || | || || || || || ||||||||||| | Sbjct 3420200 CTTATCCACGGTGAACTGAATCGCGTTCGCA-GCTGGCTTTGTGCGCAGATAGTACATGC 3420258 Query 52857 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCG 52916 | || || || || |||| |||||| || || || |||||| || ||| Sbjct 3420259 CGGTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGACGTCAGTTTGCCGTAGTTCG 3420318 Query 52917 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 52976 | ||||| | ||| || || | || |||||||| |||||||| || || | ||||| | Sbjct 3420319 GCTCTGCCACATGAATGTTGAACGACTGACTTTGGTCGATGAACGCACCACGATCTGCGG 3420378 Query 52977 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 53035 ||||||| || | | ||| | |||||||| | || || |||| |||| | Sbjct 3420379 CCATTTTAATTGTGGACTTCACGGAGATTTCCCACACGGTCTTGTAAAGATCGCGAAC-- 3420436 Query 53036 TCTTCTGG---AAGGTTTGTAT--TCTGAATAGATCCACCATCTACCA-TAATCCTATTC 53089 ||||||| | || | || |||| || || || || || | | ||| ||| Sbjct 3420437 -CTTCTGGGGAATGGCCTCAATGTTCTGGATTGAACC-CCTGCTGGAAATGATCTGGTTC 3420494 Query 53090 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 53149 || || || || | ||| || | ||||||||| | || | | ||| | || || Sbjct 3420495 TTCATATCGTCGTCCCACAAATCCAGCTCGGTTAAGTCCCTCAACAAATGATGGTTGACC 3420554 Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || || ||||| || |||| || | ||| |||||||| ||| | || || || || | | Sbjct 3420555 ACCTGGAATTCACCGGACAGAACGCGCCGGGTGTAAATGTTAGTTGTGTAGGGCTCGAAA 3420614 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 || || || || |||| ||||| ||||| ||||| || ||||| ||||| |||| | Sbjct 3420615 GATTCGTTGTTGCCCATTATTTGGGCAGTGGATGCCGTGGGCATGGGTGCAACCAGCAGG 3420674 Query 53270 CTATTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 53328 || || | ||||| || | |||| || || || | ||||| ||| || || Sbjct 3420675 GAGTTCCTGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAATCCCACAGGTC 3420733 Query 53329 CGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATCCT 53386 || || | | | || ||||| || || || || || Sbjct 3420734 CGTGGG--CTTCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCC 3420791 Query 53387 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 53446 | || || || || || ||||| || || || ||||| || || || || || ||| Sbjct 3420792 TCGTAGGTTTCATAGGGACCTTCGACCTGCGCCAGCTCACAGCTGGCTTCCAAGGCGCCG 3420851 Query 53447 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 53506 || |||||||||||||| |||| || ||| | | |||||| ||| || |||| Sbjct 3420852 TAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCCTCGCTTTCGTATGGG 3420911 Query 53507 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 53566 | | |||||| | ||||| || || || || ||||| || || | || | ||| Sbjct 3420912 AATCGCATGAGAATCAGGGCGTCAGCGAAACCCTGGACACCGATGCCCACCGGACGATGC 3420971 Query 53567 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 53626 ||| |||||| | | | ||||| | |||||| | || || || || || || ||| Sbjct 3420972 CTCAAATTAGATTTCTTTGTCTCTGGCAGGGGATAAAAGTTGATGTCAATTATCTTGTTG 3421031 Query 53627 AGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCC 53682 || |||||| || ||| || ||||||||||| |||||| | || || Sbjct 3421032 AGATTTCTGGTAACCGTCTTGGTGACTTCCTTCAGTTTTTTGAAATCATACGTCTTCTCG 3421091 Query 53683 ATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGC 53742 | | || |||||||| | ||||| |||||||| || || || || | ||| | | Sbjct 3421092 GGCG-TGACGAACATGTTGAGGGCAATGGATGCCAGGTTGCACACTGCAATCTCGTCCGG 3421150 Query 53743 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 53802 | | ||| | | || || ||||| | ||| || ||||||||||| || | ||| || Sbjct 3421151 CGCGGAATACTCAACGATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAACATTCTG 3421210 Query 53803 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAAT 53862 || || ||||| |||| |||| |||||| | || ||| | || | || ||||| | Sbjct 3421211 CTGGTTGCTCTTCCTGTTGCACGAATCCTTGAACAGCATGTACGGATTGCCGGTTTCCAC 3421270 Query 53863 CTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATA-GATTTGTATCTCT 53921 ||| || || || || || ||| | | | ||||| | | | || | | | Sbjct 3421271 CTGCGACTCAATGATGGCGAACCACAAGGACTGTGCCTTGACCGTCCGGTTCGCACGGCC 3421330 Query 53922 TTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATC 53981 | || | ||||| | || |||| ||| ||||| || ||||| |||| || || | Sbjct 3421331 CTCCTGCT-CGTATTGCGTGTACAGCTTTTCGAACTCATCGCCCCACACATCGTGCAGGC 3421389 Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 54041 | || |||| | ||||||||||| |||||| || |||| ||| || |||||||| | Sbjct 3421390 CGGGGCATTTGTGCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACGCGTTTCATGA 3421449 Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101 | ||||| || ||||| || || || ||||| | || | || ||||| || || | Sbjct 3421450 AAAGATCGGGTATCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCCTCCTTGCCGG 3421509 Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161 | ||||| || || || |||||| | | | || || ||||| || |||| ||| |||| Sbjct 3421510 TGTTCTTCTTGAGTTCCAGGAACTCGAACACGTCCGAGTGCCAGGGCTCCAGGTAAATGG 3421569 Query 54162 TCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 54221 | | || ||||| ||| || |||||||| | ||| | || || || | | Sbjct 3421570 CGAAGGCACCGGGCCGCTTGCCGCCACCCTGATCCACGTAACGTGCCACATTGTTGAAGA 3421629 Query 54222 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 54281 | || | ||| || | | |||||||| | ||||| || ||| |||| || | || Sbjct 3421630 CCCTGAGCATGGGTACCAGGCCATTGGAGGTGCCATTCGTGCCGCAGATGGAGGTGCCCT 3421689 Query 54282 TGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339 |||| || || | | ||| || || || || |||||| ||| ||||| | || Sbjct 3421690 TGGCCCGGATGCAATGGACATT--CAGTCCAATGCCTCCTGCCGATTTCGAGATCATGGC 3421747 Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399 ||| ||| | || | |||||||||| || || || ||||| | || || || Sbjct 3421748 GCACTGTTCCACCGACTTGAAGATGCCCTCGATCGAGTCGGCCGTCATGGTCAGCAGGAA 3421807 Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459 || |||| ||| | ||| | || | || ||| | || || || ||||| || Sbjct 3421808 GCACGACGACAGTTGCGGCCGATTTGTGGCTGCGGCAAAAAGCGTTGGCGAGGCGTGGGT 3421867 Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATG 54519 || | || || || || ||||| ||||| | || | || || ||| | ||| Sbjct 3421868 GAAGAACCGCTCCGACAGCAGGTTGTAGGTCTCCACGGCCGCATCGATGTCCTCTCCATG 3421927 Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579 ||||| | || || ||||| | ||||||||| || | || ||||||| |||| | Sbjct 3421928 GATTCCGATCGCCACGCGCATCAGCATGTGCTGCGGACGCTCGGCGATCTTTCCGTTTCT 3421987 Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639 ||||||| ||| || ||| | |||||||||||||| |||||||| |||||| || Sbjct 3421988 CTTCAGCAGGTACGAACGTTCGAGGGTTTTAAAACCAAAGTAGTTGTACCCAAAGTCACG 3422047 Query 54640 TTCGTAAATAAT 54651 || || || || Sbjct 3422048 ATCATAGATTAT 3422059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593681308567920