Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq5214 383 2e-101
>seq5214
Length=3698012
Score = 383 bits (424), Expect = 2e-101
Identities = 1217/1872 (65%), Gaps = 30/1872 (2%)
Strand=Plus/Plus
Query 52798 CTTGTCCAATGTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 52856
||| |||| ||||| ||||| | | || | || || || || || ||||||||||| |
Sbjct 3420200 CTTATCCACGGTGAACTGAATCGCGTTCGCA-GCTGGCTTTGTGCGCAGATAGTACATGC 3420258
Query 52857 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCG 52916
| || || || || |||| |||||| || || || |||||| || |||
Sbjct 3420259 CGGTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGACGTCAGTTTGCCGTAGTTCG 3420318
Query 52917 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 52976
| ||||| | ||| || || | || |||||||| |||||||| || || | ||||| |
Sbjct 3420319 GCTCTGCCACATGAATGTTGAACGACTGACTTTGGTCGATGAACGCACCACGATCTGCGG 3420378
Query 52977 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 53035
||||||| || | | ||| | |||||||| | || || |||| |||| |
Sbjct 3420379 CCATTTTAATTGTGGACTTCACGGAGATTTCCCACACGGTCTTGTAAAGATCGCGAAC-- 3420436
Query 53036 TCTTCTGG---AAGGTTTGTAT--TCTGAATAGATCCACCATCTACCA-TAATCCTATTC 53089
||||||| | || | || |||| || || || || || | | ||| |||
Sbjct 3420437 -CTTCTGGGGAATGGCCTCAATGTTCTGGATTGAACC-CCTGCTGGAAATGATCTGGTTC 3420494
Query 53090 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 53149
|| || || || | ||| || | ||||||||| | || | | ||| | || ||
Sbjct 3420495 TTCATATCGTCGTCCCACAAATCCAGCTCGGTTAAGTCCCTCAACAAATGATGGTTGACC 3420554
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
|| || ||||| || |||| || | ||| |||||||| ||| | || || || || | |
Sbjct 3420555 ACCTGGAATTCACCGGACAGAACGCGCCGGGTGTAAATGTTAGTTGTGTAGGGCTCGAAA 3420614
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269
|| || || || |||| ||||| ||||| ||||| || ||||| ||||| |||| |
Sbjct 3420615 GATTCGTTGTTGCCCATTATTTGGGCAGTGGATGCCGTGGGCATGGGTGCAACCAGCAGG 3420674
Query 53270 CTATTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 53328
|| || | ||||| || | |||| || || || | ||||| ||| || ||
Sbjct 3420675 GAGTTCCTGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAATCCCACAGGTC 3420733
Query 53329 CGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATCCT 53386
|| || | | | || ||||| || || || || ||
Sbjct 3420734 CGTGGG--CTTCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCC 3420791
Query 53387 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 53446
| || || || || || ||||| || || || ||||| || || || || || |||
Sbjct 3420792 TCGTAGGTTTCATAGGGACCTTCGACCTGCGCCAGCTCACAGCTGGCTTCCAAGGCGCCG 3420851
Query 53447 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 53506
|| |||||||||||||| |||| || ||| | | |||||| ||| || ||||
Sbjct 3420852 TAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCCTCGCTTTCGTATGGG 3420911
Query 53507 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 53566
| | |||||| | ||||| || || || || ||||| || || | || | |||
Sbjct 3420912 AATCGCATGAGAATCAGGGCGTCAGCGAAACCCTGGACACCGATGCCCACCGGACGATGC 3420971
Query 53567 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 53626
||| |||||| | | | ||||| | |||||| | || || || || || || |||
Sbjct 3420972 CTCAAATTAGATTTCTTTGTCTCTGGCAGGGGATAAAAGTTGATGTCAATTATCTTGTTG 3421031
Query 53627 AGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCC 53682
|| |||||| || ||| || ||||||||||| |||||| | || ||
Sbjct 3421032 AGATTTCTGGTAACCGTCTTGGTGACTTCCTTCAGTTTTTTGAAATCATACGTCTTCTCG 3421091
Query 53683 ATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGC 53742
| | || |||||||| | ||||| |||||||| || || || || | ||| | |
Sbjct 3421092 GGCG-TGACGAACATGTTGAGGGCAATGGATGCCAGGTTGCACACTGCAATCTCGTCCGG 3421150
Query 53743 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 53802
| | ||| | | || || ||||| | ||| || ||||||||||| || | ||| ||
Sbjct 3421151 CGCGGAATACTCAACGATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAACATTCTG 3421210
Query 53803 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAAT 53862
|| || ||||| |||| |||| |||||| | || ||| | || | || ||||| |
Sbjct 3421211 CTGGTTGCTCTTCCTGTTGCACGAATCCTTGAACAGCATGTACGGATTGCCGGTTTCCAC 3421270
Query 53863 CTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATA-GATTTGTATCTCT 53921
||| || || || || || ||| | | | ||||| | | | || | | |
Sbjct 3421271 CTGCGACTCAATGATGGCGAACCACAAGGACTGTGCCTTGACCGTCCGGTTCGCACGGCC 3421330
Query 53922 TTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATC 53981
| || | ||||| | || |||| ||| ||||| || ||||| |||| || || |
Sbjct 3421331 CTCCTGCT-CGTATTGCGTGTACAGCTTTTCGAACTCATCGCCCCACACATCGTGCAGGC 3421389
Query 53982 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 54041
| || |||| | ||||||||||| |||||| || |||| ||| || |||||||| |
Sbjct 3421390 CGGGGCATTTGTGCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACGCGTTTCATGA 3421449
Query 54042 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTG 54101
| ||||| || ||||| || || || ||||| | || | || ||||| || || |
Sbjct 3421450 AAAGATCGGGTATCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCCTCCTTGCCGG 3421509
Query 54102 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 54161
| ||||| || || || |||||| | | | || || ||||| || |||| ||| ||||
Sbjct 3421510 TGTTCTTCTTGAGTTCCAGGAACTCGAACACGTCCGAGTGCCAGGGCTCCAGGTAAATGG 3421569
Query 54162 TCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 54221
| | || ||||| ||| || |||||||| | ||| | || || || | |
Sbjct 3421570 CGAAGGCACCGGGCCGCTTGCCGCCACCCTGATCCACGTAACGTGCCACATTGTTGAAGA 3421629
Query 54222 CTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCAC 54281
| || | ||| || | | |||||||| | ||||| || ||| |||| || | ||
Sbjct 3421630 CCCTGAGCATGGGTACCAGGCCATTGGAGGTGCCATTCGTGCCGCAGATGGAGGTGCCCT 3421689
Query 54282 TGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGC 54339
|||| || || | | ||| || || || || |||||| ||| ||||| | ||
Sbjct 3421690 TGGCCCGGATGCAATGGACATT--CAGTCCAATGCCTCCTGCCGATTTCGAGATCATGGC 3421747
Query 54340 GCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAA 54399
||| ||| | || | |||||||||| || || || ||||| | || || ||
Sbjct 3421748 GCACTGTTCCACCGACTTGAAGATGCCCTCGATCGAGTCGGCCGTCATGGTCAGCAGGAA 3421807
Query 54400 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 54459
|| |||| ||| | ||| | || | || ||| | || || || ||||| ||
Sbjct 3421808 GCACGACGACAGTTGCGGCCGATTTGTGGCTGCGGCAAAAAGCGTTGGCGAGGCGTGGGT 3421867
Query 54460 AAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATG 54519
|| | || || || || ||||| ||||| | || | || || ||| | |||
Sbjct 3421868 GAAGAACCGCTCCGACAGCAGGTTGTAGGTCTCCACGGCCGCATCGATGTCCTCTCCATG 3421927
Query 54520 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 54579
||||| | || || ||||| | ||||||||| || | || ||||||| |||| |
Sbjct 3421928 GATTCCGATCGCCACGCGCATCAGCATGTGCTGCGGACGCTCGGCGATCTTTCCGTTTCT 3421987
Query 54580 TTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639
||||||| ||| || ||| | |||||||||||||| |||||||| |||||| ||
Sbjct 3421988 CTTCAGCAGGTACGAACGTTCGAGGGTTTTAAAACCAAAGTAGTTGTACCCAAAGTCACG 3422047
Query 54640 TTCGTAAATAAT 54651
|| || || ||
Sbjct 3422048 ATCATAGATTAT 3422059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593681308567920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |