Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq5074 266 4e-66 >seq5074 Length=4358836 Score = 266 bits (294), Expect = 4e-66 Identities = 508/745 (68%), Gaps = 20/745 (3%) Strand=Plus/Plus Query 145536 TTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTC 145595 |||||| ||||| ||||| ||| | | ||| | ||| | | | | ||||||| Sbjct 1652183 TTAGACGGCCATTTCCATCTTGATCTTGGGATAGGGATTATAGTCGACTATCTCAAAGTC 1652242 Query 145596 CTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGGG 145655 ||| | |||||| || ||||||| ||| | | | |||| ||| |||| || || Sbjct 1652243 CTCGAAGCGGAAGTCTTCGATGTCCTGCACTTGACGCTTGATCAACAGCTTGGGGAATGG 1652302 Query 145656 CCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGC 145715 | || | | |||||| |||||| ||||||||||| || ||||||||||||| Sbjct 1652303 TCTCGGCGTTCGCTCCAGCTGCTCCTTCAGCGGCTCCACGTGATTCAGGTAGACGTGCGT 1652362 Query 145716 GTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTA 145775 ||| |||| | ||| | ||||| || |||| || ||||| | ||||||| ||||| Sbjct 1652363 GTCGCCCATGGTGTGCACAAAGTCGCCTGGCTTCAGACCCGTTACATGGGCGATCATGTG 1652422 Query 145776 GGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCG 145835 ||| ||||||| |||| ||| |||||||||||||| ||||| |||||||| | | Sbjct 1652423 GGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACGCCCAGACCCATGTCGGCGCTCCT 1652482 Query 145836 CTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC------ACGTAGAACTGGCACAGGAG 145889 |||||||||||||||||||| || |||| || | || |||||||| |||| Sbjct 1652483 TTGGTACAGCTGGCAGGAGAGTTCGCCGCGCGTCTGGGAGACATAGAACTGCGCCAGGCA 1652542 Query 145890 GTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAG 145949 ||| || |||||||||||||| || | ||||| || ||||| || | | || || Sbjct 1652543 GTGACACGGCGGCAGGGCCATTTTCGGAATGTCCGATGGATTCCATGCCGACATGATGAT 1652602 Query 145950 CCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCC 146009 | |||| | ||| || || ||| | |||| | | | ||| || | ||| Sbjct 1652603 GCGCCTGTCCGAGGGATTATTCCGGATGGTGTCGATCACCTGTCGCAACTGATCGATGCC 1652662 Query 146010 CTGCCCCCGGTAATCTGTC-TTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGA 146068 || || ||| || ||| | | || | ||| | || || ||||||| |||||||| Sbjct 1652663 CTTTCCAGTGTAGTC-GTCATCGCAGGTGCCATACTCCGCTCCAAAGTGCCGCCACTGGA 1652721 Query 146069 ACCCGTAGACGGGCCCCAGGTCCC---CGG---GCTCCCTGTGCCCCAGCCCGGCCCGGG 146122 | ||||| || || ||||| || | ||| ||||| ||||||||||| | || Sbjct 1652722 AGCCGTACACCGGGCCCAGATCTCCAACGGCACGCTCCGTGTGCCCCAGCTTGTCC---- 1652777 Query 146123 CGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCAT 146182 ||||| |||| || | ||| |||||||||| | ||| | | || ||| | Sbjct 1652778 --AGGAACTCCCTGGTGCTGTTCCCGTCCCAGATGTGCACGTTCTTGGCCTGCAGCAGCT 1652835 Query 146183 TGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGA 146242 ||| ||||| ||| | ||||||||||||||| ||| ||| | | |||||| Sbjct 1652836 TGGCATCCGTCTTGCCCGCCACGAACCAGAGCAGCTCCTCGGCCACCGCGCGGAAGAAGA 1652895 Query 146243 CCCTCTTGGTGGTCAGCAGGGGGAA 146267 | | |||||||||||||| ||||| Sbjct 1652896 CGCGCTTGGTGGTCAGCAAAGGGAA 1652920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590036755913160