Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq4488 125 6e-24 seq4172 116 3e-21 seq5214 107 2e-18 seq4594 107 2e-18 seq5277 100 2e-16 >seq4488 Length=533506 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| ||| | || |||||||| || ||||| ||||||| | Sbjct 135531 CCACCGCGCAGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 135472 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||||||| ||||| || | || || | |||||| || ||| Sbjct 135471 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 135412 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| ||||| | ||| || || |||||| Sbjct 135411 ATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACC 135352 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | ||||| ||||| || ||||| Sbjct 135351 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305 >seq4172 Length=1033301 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| ||||||||||||||||||||| ||||| ||||| | | Sbjct 906968 CCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 907027 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||||||| || || || |||| | | |||||| || ||| Sbjct 907028 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGG 907087 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | ||| ||||| ||||| Sbjct 907088 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAACC 907147 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||||||||| || || || || || || ||||| Sbjct 907148 TCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| |||||||||||||||||| || ||||| ||||| | | Sbjct 906740 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 906799 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||||||||| || || || | || | | |||||| || ||| Sbjct 906800 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 906859 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| |||||| ||||| | ||| ||||| ||||| Sbjct 906860 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACC 906919 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || | || |||||||| || ||||| Sbjct 906920 TCCAAAGTGATGGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCAT 906966 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| |||||||||||||||||| || |||||||| || | | Sbjct 907196 CCTCCACGGAGACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAATCGGAC 907255 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | || |||||||| || || || | || | | |||||| || ||| Sbjct 907256 AAGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 907315 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | ||| ||||| ||||| Sbjct 907316 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACC 907375 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || | || || || || || ||||| Sbjct 907376 TCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 907422 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | || || ||||| || |||||||| || | | Sbjct 907424 CCTCCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGAC 907483 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | ||||||||||||| || || || |||| | | |||||| || ||| Sbjct 907484 AAAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGA 907543 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | ||| ||||| ||||| Sbjct 907544 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACC 907603 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||| || ||||||||||| || || || || || || |||||||| ||| Sbjct 907604 TCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCATATTG 907654 >seq5214 Length=3698012 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||||||||||||||||| |||||||||||||| | Sbjct 3523194 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 3523135 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| || | || || | |||||| || || Sbjct 3523134 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 3523075 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||||| ||| || | ||| |||||| || || Sbjct 3523074 ATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGACC 3523015 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAAT 21182 || | || ||||||||||| || | || || || || || ||||| ||| || Sbjct 3523014 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTAT 3522961 >seq4594 Length=2557182 Score = 107 bits (118), Expect = 2e-18 Identities = 228/336 (68%), Gaps = 11/336 (3%) Strand=Plus/Plus Query 23617 CCAATGATGCCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAGCGGGTGC 23676 ||||||| |||||| || | || | || | |||||||||| |||||| ||| ||| Sbjct 2006372 CCAATGACGCCGCATCCAATGCGAGCACCGGCGTTGCCCGTGGACTTGCTCAGCTCGTGG 2006431 Query 23677 TCGCCGAGGCCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCAATATACTC 23736 | || ||| || |||||| || | ||| || |||| | |||| || | || || Sbjct 2006432 CCACCCTTGCCGAGATCATCGGCATCGGCGTGGACCACCACGGTGCGTCCGATGATGCTG 2006491 Query 23737 AACGGC-CCAAACAGGGTTATCACGTTGTCGCTCATGTGTATGGCCGTGAGTGCGGTGCA 23795 |||| || ||||| || ||| |||| |||| || || | | || ||| Sbjct 2006492 T-CGGCGCCGAACAGCGTGATCCTCGAGTCGGAGATGT---TGACCTTC---GTGGGGCA 2006544 Query 23796 GCCCGCAGAGCGCAC---GTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGC 23852 | | ||| | | | ||||||||| ||||| | ||| || ||| || || |||| || Sbjct 2006545 GTCGCCAGTGGCCTCAATGTTGCCCAGATCGCCCAGGTGGCGGTCCTCGTCGGCGGGGGC 2006604 Query 23853 GCCGTGTCTCTGGCGGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGT 23912 ||| || || || | ||| || || ||| || | ||| ||||||||||| || | Sbjct 2006605 GCCATGCTCCTTGCCGTAGGGATTGAAATGCGGCCCCGATGACATGCAGCCGTTGGTGTT 2006664 Query 23913 GTCGCCGAATTCGTGCACGTGAAAACCGTGCAGCCC 23948 ||| ||||| |||||||| || || |||||||| || Sbjct 2006665 GTCCCCGAACTCGTGCACATGGAATCCGTGCAGACC 2006700 >seq5277 Length=7425378 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025 ||||| |||||||| |||||||| || ||||| || |||| || || || | ||||| Sbjct 1193221 CACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGACAACGTACGGCCATCCTC 1193162 Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085 ||| || || || ||| |||| || | |||||| || ||| | |||||||||||| Sbjct 1193161 CAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTG 1193102 Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145 |||||| ||||| | | | |||||| || || |||| || |||||||| Sbjct 1193101 GATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTCTT 1193042 Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| || | || || || || || ||||| Sbjct 1193041 GCCCGTCAGGGTCTTCACGAAGATCTGCAT 1193012 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| || | ||||| || || |||||||| || || | Sbjct 1193010 CCACCACGGAGACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAA 1192951 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | || || ||||| ||||| ||| | || |||| |||||| || ||| Sbjct 1192950 AGAGTACGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGA 1192891 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| ||||| | | | ||||| ||||| Sbjct 1192890 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGACC 1192831 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||| |||||||||||||| || || || || ||||| || |||||||||| Sbjct 1192830 TCCAAAGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTTGA 1192779 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | |||||||| || | || || ||||| || ||||| || || | Sbjct 1194380 TTCCTCCGCGTAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGG 1194321 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| || | ||||||||| ||| ||||| ||| | || | | ||||||||| || Sbjct 1194320 ACAGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGG 1194261 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| ||| || ||||| | | | || ||| |||||| Sbjct 1194260 GAATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCA 1194201 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| |||||||||||||| |||| || || || || |||||||| Sbjct 1194200 CCTCCAGTGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||| | || || | | |||||||| || || || Sbjct 1193892 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCCAGTTGCTTACCA 1193833 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| || | |||||| || ||| | ||| |||||||| || || || Sbjct 1193832 GCAAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCCTTT 1193773 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | | |||||| |||||| ||| | ||| ||||||||||| ||||| || Sbjct 1193772 ACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGGGTGATGGTCTTGCCAGTTAAGGTC 1193713 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 1193712 TTCACGAAGATCTGCAT 1193696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422231260824164