Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq4488 125 6e-24
seq4172 116 3e-21
seq5214 107 2e-18
seq4594 107 2e-18
seq5277 100 2e-16
>seq4488
Length=533506
Score = 125 bits (138), Expect = 6e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| ||| | || |||||||| || ||||| ||||||| |
Sbjct 135531 CCACCGCGCAGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 135472
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| | | ||||||||||| ||||| || | || || | |||||| || |||
Sbjct 135471 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 135412
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| ||||| ||||| | ||| || || ||||||
Sbjct 135411 ATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACC 135352
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||| |||||||||||||| | ||||| ||||| || |||||
Sbjct 135351 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305
>seq4172
Length=1033301
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | || |||| ||||||||||||||||||||| ||||| ||||| | |
Sbjct 906968 CCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 907027
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | ||||||||||| || || || |||| | | |||||| || |||
Sbjct 907028 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGG 907087
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| |||||| ||||| | ||| ||||| |||||
Sbjct 907088 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAACC 907147
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| || |||||||||||||| || || || || || || |||||
Sbjct 907148 TCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | || |||| |||||||||||||||||| || ||||| ||||| | |
Sbjct 906740 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 906799
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | | ||||||||||| || || || | || | | |||||| || |||
Sbjct 906800 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 906859
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||||| |||||| ||||| | ||| ||||| |||||
Sbjct 906860 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACC 906919
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| || ||||||||||| || | || |||||||| || |||||
Sbjct 906920 TCCAAAGTGATGGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCAT 906966
Score = 98.7 bits (108), Expect = 8e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | |||||||| |||||||||||||||||| || |||||||| || | |
Sbjct 907196 CCTCCACGGAGACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAATCGGAC 907255
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| ||| | | || |||||||| || || || | || | | |||||| || |||
Sbjct 907256 AAGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGA 907315
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| |||||| ||||| | ||| ||||| |||||
Sbjct 907316 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACC 907375
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| || ||||||||||| || | || || || || || |||||
Sbjct 907376 TCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 907422
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | || |||| || | || || ||||| || |||||||| || | |
Sbjct 907424 CCTCCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGAC 907483
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| || | ||||||||||||| || || || |||| | | |||||| || |||
Sbjct 907484 AAAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGA 907543
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| |||||| ||||| | ||| ||||| |||||
Sbjct 907544 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACC 907603
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|||| || ||||||||||| || || || || || || |||||||| |||
Sbjct 907604 TCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCATATTG 907654
>seq5214
Length=3698012
Score = 107 bits (118), Expect = 2e-18
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | ||||||| ||||||||||||||||| |||||||||||||| |
Sbjct 3523194 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 3523135
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || | || |||||||| ||||| || | || || | |||||| || ||
Sbjct 3523134 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 3523075
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||| ||||| ||||| ||| || | ||| |||||| || ||
Sbjct 3523074 ATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGACC 3523015
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAAT 21182
|| | || ||||||||||| || | || || || || || ||||| ||| ||
Sbjct 3523014 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTAT 3522961
>seq4594
Length=2557182
Score = 107 bits (118), Expect = 2e-18
Identities = 228/336 (68%), Gaps = 11/336 (3%)
Strand=Plus/Plus
Query 23617 CCAATGATGCCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAGCGGGTGC 23676
||||||| |||||| || | || | || | |||||||||| |||||| ||| |||
Sbjct 2006372 CCAATGACGCCGCATCCAATGCGAGCACCGGCGTTGCCCGTGGACTTGCTCAGCTCGTGG 2006431
Query 23677 TCGCCGAGGCCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCAATATACTC 23736
| || ||| || |||||| || | ||| || |||| | |||| || | || ||
Sbjct 2006432 CCACCCTTGCCGAGATCATCGGCATCGGCGTGGACCACCACGGTGCGTCCGATGATGCTG 2006491
Query 23737 AACGGC-CCAAACAGGGTTATCACGTTGTCGCTCATGTGTATGGCCGTGAGTGCGGTGCA 23795
|||| || ||||| || ||| |||| |||| || || | | || |||
Sbjct 2006492 T-CGGCGCCGAACAGCGTGATCCTCGAGTCGGAGATGT---TGACCTTC---GTGGGGCA 2006544
Query 23796 GCCCGCAGAGCGCAC---GTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGC 23852
| | ||| | | | ||||||||| ||||| | ||| || ||| || || |||| ||
Sbjct 2006545 GTCGCCAGTGGCCTCAATGTTGCCCAGATCGCCCAGGTGGCGGTCCTCGTCGGCGGGGGC 2006604
Query 23853 GCCGTGTCTCTGGCGGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGT 23912
||| || || || | ||| || || ||| || | ||| ||||||||||| || |
Sbjct 2006605 GCCATGCTCCTTGCCGTAGGGATTGAAATGCGGCCCCGATGACATGCAGCCGTTGGTGTT 2006664
Query 23913 GTCGCCGAATTCGTGCACGTGAAAACCGTGCAGCCC 23948
||| ||||| |||||||| || || |||||||| ||
Sbjct 2006665 GTCCCCGAACTCGTGCACATGGAATCCGTGCAGACC 2006700
>seq5277
Length=7425378
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 20966 CACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTC 21025
||||| |||||||| |||||||| || ||||| || |||| || || || | |||||
Sbjct 1193221 CACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGACAACGTACGGCCATCCTC 1193162
Query 21026 CAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGC 21085
||| || || || ||| |||| || | |||||| || ||| | ||||||||||||
Sbjct 1193161 CAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTG 1193102
Query 21086 GATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTT 21145
|||||| ||||| | | | |||||| || || |||| || ||||||||
Sbjct 1193101 GATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTCTT 1193042
Query 21146 GCCGGTTAACGTTTTGACAAATATTTGCAT 21175
||| || | || || || || || |||||
Sbjct 1193041 GCCCGTCAGGGTCTTCACGAAGATCTGCAT 1193012
Score = 98.7 bits (108), Expect = 8e-16
Identities = 161/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || | ||| |||| || | ||||| || || |||||||| || || |
Sbjct 1193010 CCACCACGGAGACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAA 1192951
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | || || ||||| ||||| ||| | || |||| |||||| || |||
Sbjct 1192950 AGAGTACGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGA 1192891
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| |||||||| ||||| ||||| | | | ||||| |||||
Sbjct 1192890 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGACC 1192831
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180
|||| |||||||||||||| || || || || ||||| || ||||||||||
Sbjct 1192830 TCCAAAGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTTGA 1192779
Score = 98.7 bits (108), Expect = 8e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| || || || | |||||||| || | || || ||||| || ||||| || || |
Sbjct 1194380 TTCCTCCGCGTAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGG 1194321
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
||| || | ||||||||| ||| ||||| ||| | || | | ||||||||| ||
Sbjct 1194320 ACAGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGG 1194261
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | || |||||||| ||| || ||||| | | | || ||| ||||||
Sbjct 1194260 GAATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCA 1194201
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| |||||||||||||| |||| || || || || ||||||||
Sbjct 1194200 CCTCCAGTGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|| |||||||| || ||||| ||||| | || || | | |||||||| || || ||
Sbjct 1193892 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCCAGTTGCTTACCA 1193833
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| |||| || | |||||| || ||| | ||| |||||||| || || ||
Sbjct 1193832 GCAAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCCTTT 1193773
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | | |||||| |||||| ||| | ||| ||||||||||| ||||| ||
Sbjct 1193772 ACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGGGTGATGGTCTTGCCAGTTAAGGTC 1193713
Query 21159 TTGACAAATATTTGCAT 21175
|| || || || |||||
Sbjct 1193712 TTCACGAAGATCTGCAT 1193696
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422231260824164
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