Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq4488 134 9e-27 seq4172 122 6e-23 seq5277 116 2e-21 seq5214 113 3e-20 >seq4488 Length=533506 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | |||||||| || | || || ||||| ||||||||||| ||| Sbjct 135531 CCACCGCGCAGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 135472 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| ||||| || || |||||||| || ||| Sbjct 135471 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 135412 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | || | |||| | || || Sbjct 135411 ATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACC 135352 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||||||||| |||||||||||||||||||| Sbjct 135351 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305 >seq4172 Length=1033301 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| |||| || ||||| || ||||| ||||||||||||||| Sbjct 906740 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 906799 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||| || ||||| || | |||||||| || ||| Sbjct 906800 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 906859 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | || | ||||| | ||||| Sbjct 906860 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACC 906919 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| |||||||| || |||||||||||||| Sbjct 906920 TCCAAAGTGATGGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCAT 906966 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| |||| || ||||| || || || ||||||||||||||| Sbjct 906968 CCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 907027 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||| || |||||||| | |||||||| || ||| Sbjct 907028 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGG 907087 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | || | ||||| | || || Sbjct 907088 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAACC 907147 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| | ||| || || ||||||||||| Sbjct 907148 TCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || ||||| || ||||| ||||| || ||||||| ||| | || Sbjct 907211 AGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTACGTCCATCT 907270 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || ||||| || | |||||||| || ||| | | ||||||||| Sbjct 907271 TCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 907330 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | ||||| | || || |||| |||||||| Sbjct 907331 TGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTC 907390 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || ||||| ||||| ||||||||||| Sbjct 907391 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 907422 >seq5277 Length=7425378 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| |||||||| ||||| || |||| | || || | ||||||||| || || Sbjct 1192975 TTCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCCATCTTCAAGCTGCTTGCCGGCAAA 1192916 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || |||||||| || ||| | || ||||||||| ||||| ||| | || Sbjct 1192915 GATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATT 1192856 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | |||| ||||| | ||||| |||| || ||||| ||||| || | || ||||| Sbjct 1192855 CTCAATCGTATCGGAAGGCTCGACCTCCAAAGTAATGGTCTTGCCAGTCAAGGTCTTCAC 1192796 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 1192795 AAAGATCTGCAT 1192784 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||| ||| ||||| || ||||| |||||||| || ||| Sbjct 1193238 CCACCACGAAGACGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGAC 1193179 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | | |||| | || |||| ||||| || || |||||||| |||||||| || ||| Sbjct 1193178 AACGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGG 1193119 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | || | ||| | | ||| || Sbjct 1193118 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACC 1193059 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||| ||||||||||| Sbjct 1193058 TCCAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1193012 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||| ||| | ||| |||||||| ||||||||||| ||| Sbjct 1194150 CCACCCCGAAGACGCAACACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 1194091 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| | || |||| ||||| || ||||||||||| |||||||| || ||| Sbjct 1194090 AAGGTACGGCCATCCTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 1194031 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| ||||| ||||| ||| | | | || | ||| | | || || Sbjct 1194030 ATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGCTCAACC 1193971 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || |||||||| ||||| || || ||||| ||||| ||||| Sbjct 1193970 TCCAGAGTTATGGTTTTACCGGTCAGGGTCTTCACGAAGATTTGCAT 1193924 Score = 102 bits (112), Expect = 5e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218 || ||| ||||| || | ||||||| ||| | || ||| ||||| |||||||| || Sbjct 1194382 GATTCCTCCGCGTAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATC 1194323 Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278 |||||| || |||| |||||||||||||| || || || | ||||||||||| Sbjct 1194322 GGACAGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGG 1194263 Query 34279 GGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTC 34338 ||| | | ||||||||| || || ||| | || | || | || | | || Sbjct 1194262 GGGAATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTC 1194203 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||| || ||||| ||||| || || || ||||| ||||| ||||| Sbjct 1194202 CACCTCCAGTGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | ||| || ||||| |||||||||||||| Sbjct 1193466 CCACCTCGCAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 1193407 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||||||| || |||||||| ||||| |||||||| || || Sbjct 1193406 AGAGTGCGACCATCTTCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGGA 1193347 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| || || ||| | | | || | ||| | | ||| || Sbjct 1193346 ATTCCCTCCTTGTCCTGAATTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACC 1193287 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||| ||||| || || || || ||||| ||||| Sbjct 1193286 TCCAGAGTGATGGTTTTACCGGTAAGGGTCTTTACGAAGATTTGCAT 1193240 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || |||| ||| | || ||| || || |||||||||||||| Sbjct 1193694 CCACCGCGAAGACGGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGAT 1193635 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | ||||||||| || ||||| | |||||||| || ||| Sbjct 1193634 AGGGTTCGTCCATCCTCAAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGGA 1193575 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | || | ||| | | ||| || Sbjct 1193574 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGTTCAACC 1193515 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| ||||||||||| ||||| | || ||||| ||||| ||||| Sbjct 1193514 TCCAGAGTGATGGTTTTTCCGGTTAAGGTCTTCACGAAGATTTGCAT 1193468 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| || ||||| |||||||||||||| || || | || Sbjct 1193907 AGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCC 1193848 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||||| || || |||||||| |||||||| || ||| | || ||||||||| Sbjct 1193847 TCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTC- 1193789 Query 34298 GCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||||| ||||| || | || | ||| | | || || || | ||||||| Sbjct 1193788 -CTGAATTTTGGCCTTTACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGGGTGATGG 1193730 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | ||||| || | || ||||| ||||||||||| Sbjct 1193729 TCTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 1193696 >seq5214 Length=3698012 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||| ||| ||||| || ||||| ||||| ||||| || Sbjct 3523194 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 3523135 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| ||||| || || |||||||| || || Sbjct 3523134 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 3523075 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCGAC 34341 | | || ||||| ||||| |||||| || | || | ||| | || |||||| Sbjct 3523074 ATTCCTTCTTTGTCCTGAATCTTG-GCTTTAACATTTTCGATAGTATCCGACGGTTCGAC 3523016 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||| ||||| || || || |||||||||||| Sbjct 3523015 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATC 3522967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323050623638240