Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq5010 105 1e-17 seq5214 91.5 3e-13 >seq5010 Length=1006826 Score = 105 bits (116), Expect = 1e-17 Identities = 267/397 (67%), Gaps = 18/397 (5%) Strand=Plus/Plus Query 253995 GGCGACCTTCCTCATTTGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATC 254054 || || || || || |||| || |||| |||||||| || ||||| || || ||| Sbjct 146183 GGGGATCTGCCCAATATGCTGCTCTACGGACCTCCCGGCACCGGCAAAACCAGTACAATC 146242 Query 254055 CTGGCG-CTGGCCCGAACCCTGTTGGGCGAGGGGAACATGAGAGAGCGCGTGCTCGAGCT 254113 ||||| | |||| | | ||||| || | || | || ||| | || ||||| Sbjct 146243 TTGGCGGCCGGCCGGCAGATCTTTGGG-GACATGTTCAAG---GATCGCATCCTGGAGCT 146298 Query 254114 GAACGCTTCTGACGAACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTCCAA 254173 |||||| || ||||| || || | | || || ||| ||| ||||||| ||||| | Sbjct 146299 GAACGCCTCCGACGAGCGGGGCATCAATGTGGTGCGCACCAAAATCAAGAACTTCTCGCA 146358 Query 254174 GATGTCG------ATTTCGTCGTTCCAAC--CCGGC--TGTCCGCCTTTCAAGCTCGTGA 254223 | | ||| | | | ||| | || | | | |||||||| |||||| || | | Sbjct 146359 GCTCTCGGCCAGCAGTGTG-CGTCCGGACGGCAGACCGTGTCCGCCCTTCAAGATCATCA 146417 Query 254224 TCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGG 254283 | ||||||||||| ||| | ||||| | ||| |||||||| || || || || |||| Sbjct 146418 TTCTGGACGAGGCCGACTCGATGACCCATGCCGCTCAGTCCGCACTGCGTCGCACCATGG 146477 Query 254284 AGACGCA-CTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATC 254342 | | | | |||| | || || || |||||| | |||||||| || || | |||||| Sbjct 146478 AAAAGGAGAGCCGTAG-CACCCGCTTCTGCCTGATCTGCAACTATGTCTCCAGGATCATT 146536 Query 254343 GCCCCGCTGGCTTCTCGGTGCGCCAAGTTTCGATTCA 254379 | || | |||| || ||| ||||||| || |||| Sbjct 146537 GTGCCCATTACTTCGCGCTGCTCCAAGTTCCGCTTCA 146573 >seq5214 Length=3698012 Score = 91.5 bits (100), Expect = 3e-13 Identities = 303/461 (66%), Gaps = 19/461 (4%) Strand=Plus/Minus Query 249277 TTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAG 249336 |||||||| || |||| |||||| | || | || ||||||||||| | || ||| Sbjct 3421573 TTCGCCATTTACCTGGAGCCCTGGCACTCGGACGTGTTCGAGTTCCTGGAACTCAAGAAG 3421514 Query 249337 AACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGAC 249396 |||| |||||| ||| | | || || || |||||||||| ||| ||| | |||| Sbjct 3421513 AACACCGGCAAGGAGGAGAATCGCGCCCGCGATCTCTTCTACGCCCTCTGGATACCCGAT 3421454 Query 249397 TTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCG-TCCGACGC 249455 | |||||| |||||| ||||| |||| || ||| |||| | | |||| | | || Sbjct 3421453 CTTTTCATGAAACGCGTCGAGGCCAACGGGGACTGGTCGCTGATGTGTCCGCACAAATGC 3421394 Query 249456 CCCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGC-CTATAAGAAATACGAAT 249514 ||||| ||| |||| | |||| || ||||| |||| || | | ||||||| Sbjct 3421393 CCCGG-CCTGCACGATGTGTGGGGCGATGAGTTCGA-AAAGCTGTACACGCAATACGAGC 3421336 Query 249515 CCAACGGCATCGGCAA---GACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTGG 249568 | ||| | || ||| ||||||| | | || | || || | | | | Sbjct 3421335 AGGAGGGCCGTGCGAACCGGACGGTCAAGGCACAGTCCTTGTGGTTCGCCA---TCATTG 3421279 Query 249569 AGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAGA 249628 |||| ||| | || || || ||||| ||||||| || |||||||| |||| Sbjct 3421278 AGTCGCAGGTGGAAACCGGCAATCCGTACATGCTGTTCAAGGATTCGTGCAACAGGAAGA 3421219 Query 249629 GTAACCAACGGCATCTTGGTACCATC-CGCTCGTCAAATCTCTGTGCA--GAGGTGATTC 249685 | ||||| | | || |||| |||||| | | ||| | |||||| || | || Sbjct 3421218 GCAACCAGCAGAATGTTGGCACCATCAAGTGCAGCAA---TTTGTGCACCGAAATCGTTG 3421162 Query 249686 AATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCA 249726 | || || | ||| |||||||| || |||||||||||| Sbjct 3421161 AGTATTCCGCGCCGGACGAGATTGCAGTGTGCAACCTGGCA 3421121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073691709815872