Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq5277 89.7 4e-13 >seq5277 Length=7425378 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| |||||| || || || || || ||||||||||||| Sbjct 1193922 CCACCACGAAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 1193863 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| |||| ||| || || ||| | || || | || ||||| ||| Sbjct 1193862 AGAGTGCGACCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGA 1193803 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | ||| ||||| || ||||| ||| || | ||| || ||| |||||| | Sbjct 1193802 ATGCCCTCCTTGTCCTGAATTTTGGCCTTTACATTCTCAATGGTATCAGAGGGCTCAACT 1193743 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | ||||| || || || || || || || ||||| Sbjct 1193742 TCAAGGGTGATGGTCTTGCCAGTTAAGGTCTTCACGAAGATCTGCAT 1193696 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || |||||||| ||||||||||| |||| | || | |||| Sbjct 1192995 AGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCCATCT 1192936 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || ||||| ||| |||| |||| || ||||| ||| | ||| ||||| || Sbjct 1192935 TCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 1192876 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | ||| || | ||| || || |||||| || | || ||| | Sbjct 1192875 TGAATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAGTAATGGTC 1192816 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| ||||| || || ||||| || |||||||| Sbjct 1192815 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 1192781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379318900348605