Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_003085.1 Length=49534 Score E Sequences producing significant alignments: (Bits) Value seq5079 107 6e-19 >seq5079 Length=1084440 Score = 107 bits (118), Expect = 6e-19 Identities = 284/426 (67%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 1936 GTGTGGCGGAAGCAGAACGGCAGCGGCTTCGCCACCGACAGGTTCCGCCGCGTGCATGAG 1995 || ||| ||||||||||||||||| || | ||||| | || || || || ||||| Sbjct 1051967 GTCTGGGAGAAGCAGAACGGCAGCGTGTTTCACGCCGACCGCTTTCGGCGTGTTCATGAA 1052026 Query 1996 CAGCCCGTCCACTTCTACCGAGCGGATGCGGCGTGGCGCGATGTGTTCCACCAAGTGCCC 2055 | | ||| || ||||| | ||| || |||| || | | | || ||||| | Sbjct 1052027 CTGATCGTGCAGTTCTATCCCGCGACCGCCCGCTGGCAGGACATCTACAACGAAGTGGCT 1052086 Query 2056 GTCACCATGGATGCCAAGGCCCGGACGGTGACGCGACGAGCGCAGCC-GCCGCACCTCGG 2114 ||| || ||| ||| ||||||||| ||| ||| | ||| ||||||| ||| Sbjct 1052087 ACCACGGACGACGCCCGGGCGCGGACGGTG-CGCCGTAAGCACCGCCCGCCGCACACCGG 1052145 Query 2115 CGCCATCGGCGCCCACAAGTA-CACGTCCGAGGACGGCGGCCCCCGCCTCATGACGTCCG 2173 |||||||| || || || | | || | |||||||||| || ||| |||| Sbjct 1052146 CGCCATCGCGGCATGCACCTATCGCAGCCTCG-ACGGCGGCCCGCGTCTCGCCCGCTCCG 1052204 Query 2174 TGCTGGAAGTGCGAAACTGCCACGGGTTCGCCGTCAACGAGACACAGAAGCCAGTGGCGC 2233 ||| | | || ||| || ||| |||| || || || | ||||| ||| ||| Sbjct 1052205 TGCAGCGTTTCCGCAACGTTCATGGGCGCGCCATCCACCCCACCGAAAAGCCGGTGCCGC 1052264 Query 2234 TCGTGGAACCGCTGGTGCGCAATGCCTGCCCACCGGGGGGCCTCGTCGCGGACTTCTTCG 2293 | | || | |||||||||| |||||| || | |||||||||| |||| |||| Sbjct 1052265 TGCTCGACCTGCTGGTGCGCGTGAGCTGCCCGCCTGACGGCCTCGTCGGCGACTGGTTCG 1052324 Query 2294 CGGGCTCCGGC-AGCACGGCGCTGGCCTGCCTCGCCACCGGCCGCCGCTTCATCGGTTGC 2352 | || |||||| | ||||| | ||||||| |||||||||||| |||||||| Sbjct 1052325 CCGGGTCCGGCGCGGCCGGCG-TCGCCTGCCGACTGGCCGGCCGCCGCTATGTCGGTTGC 1052383 Query 2353 GACATC 2358 || ||| Sbjct 1052384 GAAATC 1052389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158376988876208