Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5214 372 4e-98 >seq5214 Length=3698012 Score = 372 bits (412), Expect = 4e-98 Identities = 1221/1879 (65%), Gaps = 44/1879 (2%) Strand=Plus/Plus Query 62036 CTTGTCCAATGTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62094 ||| |||| ||||| ||||| | | || | || || || || || ||||||||||| | Sbjct 3420200 CTTATCCACGGTGAACTGAATCGCGTTCGCA-GCTGGCTTTGTGCGCAGATAGTACATGC 3420258 Query 62095 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62154 | || || || || |||| |||||| || || ||| |||||| || ||| Sbjct 3420259 CGGTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGACGTCAGTTTGCCGTAGTTCG 3420318 Query 62155 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62214 | ||||| | ||| || || | || |||||||| |||||||| || || | ||||| | Sbjct 3420319 GCTCTGCCACATGAATGTTGAACGACTGACTTTGGTCGATGAACGCACCACGATCTGCGG 3420378 Query 62215 CCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 62273 ||||||| || | | ||| | |||||||| | || || |||| |||| | Sbjct 3420379 CCATTTTAATTGTGGACTTCACGGAGATTTCCCACACGGTCTTGTAAAGATCGCGAAC-- 3420436 Query 62274 TCTTCTGG---AAGGTTTGTAT--TCTGAATGGATCCACCATCTACCA-TAATCCTATTC 62327 ||||||| | || | || |||| || || || || || | | ||| ||| Sbjct 3420437 -CTTCTGGGGAATGGCCTCAATGTTCTGGATTGAACC-CCTGCTGGAAATGATCTGGTTC 3420494 Query 62328 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACT 62387 || || || || | ||| || | ||||||||| | || | | ||| |||| || Sbjct 3420495 TTCATATCGTCGTCCCACAAATCCAGCTCGGTTAAGTCCCTCAACAAATGATGGTTGACC 3420554 Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || |||||||| || |||| || | ||| |||||||| ||| | || || || || | Sbjct 3420555 ACCTGGAATTCACCGGACAGAACGCGCCGGGTGTAAATGTTAGTTGTGTAGGGCTCGAAA 3420614 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 || || || || |||| ||||| ||||| ||||| || ||||| ||||| |||| | Sbjct 3420615 GATTCGTTGTTGCCCATTATTTGGGCAGTGGATGCCGTGGGCATGGGTGCAACCAGCAGG 3420674 Query 62508 CTATTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATC 62566 || || | ||||| || | |||| || || || | | ||||| ||| || || Sbjct 3420675 GAGTTCCTGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAATCCCACAGGTC 3420733 Query 62567 CGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACG 62619 || || | | ||| || || ||||| || || || || Sbjct 3420734 CGTGGGCTTCTTGTCCCACATGTCG-------TACTGCAGAATTCCCTTGCTCACGGGGC 3420786 Query 62620 ATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATG 62679 || | || || ||||| || ||||| || || || | ||| || || || || | Sbjct 3420787 TGCCCTCGTAGGTTTCATAGGGACCTTCGACCTGCGCCAGCTCACAGCTGGCTTCCAAGG 3420846 Query 62680 CACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAA 62739 | ||||| ||||||||||| || |||| || ||| | | |||||| ||| || Sbjct 3420847 CGCCGTAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCCTCGCTTTCGT 3420906 Query 62740 ATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTC 62799 |||| | | |||||| | ||||| || || || || ||||| || || | || | Sbjct 3420907 ATGGGAATCGCATGAGAATCAGGGCGTCAGCGAAACCCTGGACACCGATGCCCACCGGAC 3420966 Query 62800 TATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTT 62859 ||| ||| |||||| | | | ||||| | |||||| | || || || || || | Sbjct 3420967 GATGCCTCAAATTAGATTTCTTTGTCTCTGGCAGGGGATAAAAGTTGATGTCAATTATCT 3421026 Query 62860 TATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCC 62919 | |||||||||||| || ||| || ||||||||||| |||||| | || | Sbjct 3421027 TGTTGAGATTTCTGGTAACCGTCTTGGTGACTTCCTTCAGTTTTTTGAAATCATA-CGTC 3421085 Query 62920 CATCTA-----TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTC 62974 ||| | || |||||||| | |||| |||||||| || ||||| || | ||| Sbjct 3421086 T-TCTCGGGCGTGACGAACATGTTGAGGGCAATGGATGCCAGGTTGCACACTGCAATCTC 3421144 Query 62975 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAA 63034 | | | | ||| | | || || ||||| | ||| || |||||||| || || | Sbjct 3421145 GTCCGGCGCGGAATACTCAACGATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAAC 3421204 Query 63035 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGT 63094 ||| || || || ||||| |||| |||| |||||| | || ||| | ||| | || || Sbjct 3421205 ATTCTGCTGGTTGCTCTTCCTGTTGCACGAATCCTTGAACAGCATGTACGGATTGCCGGT 3421264 Query 63095 TTCAATCTGAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATA-GATTTG 63152 ||| | ||| || || || || || ||| | | ||| | ||||| | | | || | Sbjct 3421265 TTCCACCTGCGACTCAATGATGGCGAACCACAAGGACT-GTGCCTTGACCGTCCGGTTCG 3421323 Query 63153 TATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTG 63212 | || | || | ||||| | || |||| ||||||||| || ||||| |||| | Sbjct 3421324 CACGGCCCTCCTGCT-CGTATTGCGTGTACAGCTTTTCGAACTCATCGCCCCACACATCG 3421382 Query 63213 TCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGT 63272 | || | || |||| | ||||||||||| |||||| || |||| ||| || ||| Sbjct 3421383 TGCAGGCCGGGGCATTTGTGCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACGCGT 3421442 Query 63273 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCG 63332 ||||| || ||||| || ||||| || || || ||||| | | | || ||||| Sbjct 3421443 TTCATGAAAAGATCGGGTATCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCCTCC 3421502 Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 || || || ||||| || || || |||||| | | | || || ||||| || |||| | Sbjct 3421503 TTGCCGGTGTTCTTCTTGAGTTCCAGGAACTCGAACACGTCCGAGTGCCAGGGCTCCAGG 3421562 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 || ||||| | | || ||||| ||| || |||||||| | ||| | || || Sbjct 3421563 TAAATGGCGAAGGCACCGGGCCGCTTGCCGCCACCCTGATCCACGTAACGTGCCACATTG 3421622 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 || | || || | ||| || | | || || || | ||||| || ||| |||| || Sbjct 3421623 TTGAAGACCCTGAGCATGGGTACCAGGCCATTGGAGGTGCCATTCGTGCCGCAGATGGAG 3421682 Query 63513 CCTCCACTGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63570 || |||| || || | | ||| || || || || |||||| ||| |||| Sbjct 3421683 GTGCCCTTGGCCCGGATGCAATGGACATT--CAGTCCAATGCCTCCTGCCGATTTCGAGA 3421740 Query 63571 TTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAA 63630 | | ||||| ||| | || | ||||||| || || || | ||||| | | Sbjct 3421741 TCATGGCGCACTGTTCCACCGACTTGAAGATGCCCTCGATCGAGTCGGCCGTCATGGTCA 3421800 Query 63631 GTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63690 | || || || |||| ||| | ||| | || | || ||| | || || || | Sbjct 3421801 GCAGGAAGCACGACGACAGTTGCGGCCGATTTGTGGCTGCGGCAAAAAGCGTTGGCGAGG 3421860 Query 63691 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 63750 |||| || || | || || || || ||||| ||||| | || | || || ||| Sbjct 3421861 CGTGGGTGAAGAACCGCTCCGACAGCAGGTTGTAGGTCTCCACGGCCGCATCGATGTCCT 3421920 Query 63751 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGT 63810 | ||| ||||| | || || ||||| | ||||||||| || | || | || || Sbjct 3421921 CTCCATGGATTCCGATCGCCACGCGCATCAGCATGTGCTGCGGACGCTCGGCGATCTTTC 3421980 Query 63811 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63870 |||| | |||| || ||| || ||| | |||||||||||||| |||||||| || Sbjct 3421981 CGTTTCTCTTCAGCAGGTACGAACGTTCGAGGGTTTTAAAACCAAAGTAGTTGTACCCAA 3422040 Query 63871 AGTCTCGTTCGTAAATAAT 63889 |||| || || || || || Sbjct 3422041 AGTCACGATCATAGATTAT 3422059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629774859003120