Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq4422 109 1e-19 seq5079 82.4 2e-11 >seq4422 Length=139152 Score = 109 bits (120), Expect = 1e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27133 ATGCCGGATATTGCCGCCGATGCAAAAGCCATTGCGTTTGGTAACTTCAAACGCGGCTAT 27192 |||||||||||||| || || | |||||||||| || || ||||| || | ||| Sbjct 124008 ATGCCGGATATTGCAGCAAGCGCTATCCCCATTGCGTTCGGCAATTTCAAGCGGGCCTAC 123949 Query 27193 ACCATCGTTGACCGCATCGGTACCCGTATCCTGCGCGATCCGTACACCAACAAACCGTTT 27252 | ||||| ||||| || || | ||| | || || ||||| ||||||||||| |||||| Sbjct 123948 ATGATCGTGGACCGTATTGGCATCCGGACGCTTCGGGATCCCTACACCAACAAGCCGTTT 123889 Query 27253 GTGGGTTTTTATACCACCAAGCGAACCGGCGGTAT 27287 || || ||||| ||||||| || ||||| || || Sbjct 123888 GTTGGGTTTTACGCCACCAAACGCACCGGTGGGAT 123854 >seq5079 Length=1084440 Score = 82.4 bits (90), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 3/101 (3%) Strand=Plus/Minus Query 17329 CATCATGCGTTGTTAGCTCAGTCGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGG 17388 ||||| ||| |||||||||| ||| ||||||| ||||||||||| | |||| |||| Sbjct 782351 CATCACGCGCCCTTAGCTCAGTTGGATAGAGCAACAGCCTTCTAAGCTGTGGGTCGCTGG 782292 Query 17389 TTCGAATCCAGTACAACGCGCCACACTTATTTTCCCTGGCT 17429 ||||||||||| | ||||||| || ||||| ||||| Sbjct 782291 TTCGAATCCAGCAGGGCGCGCCA---TTCTTTTCAATGGCT 782254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136109624531826