Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5214 399 3e-106 >seq5214 Length=3698012 Score = 399 bits (442), Expect = 3e-106 Identities = 1224/1874 (65%), Gaps = 34/1874 (2%) Strand=Plus/Plus Query 64829 CTTGTCCAATGTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 64887 ||| |||| ||||| ||||| | | || | || || || || || ||||||||||| | Sbjct 3420200 CTTATCCACGGTGAACTGAATCGCGTTCGCA-GCTGGCTTTGTGCGCAGATAGTACATGC 3420258 Query 64888 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 64947 | || || || || |||| |||||| || || ||| |||||| || ||| Sbjct 3420259 CGGTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGACGTCAGTTTGCCGTAGTTCG 3420318 Query 64948 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 65007 | ||||| | ||| || || | || |||||||| |||||||| || || | ||||| | Sbjct 3420319 GCTCTGCCACATGAATGTTGAACGACTGACTTTGGTCGATGAACGCACCACGATCTGCGG 3420378 Query 65008 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 65066 ||||||| || | | ||| | |||||||| | || || |||| |||| | Sbjct 3420379 CCATTTTAATTGTGGACTTCACGGAGATTTCCCACACGGTCTTGTAAAGATCGCGAAC-- 3420436 Query 65067 TCTTCTGG---AAGGTTTGTAT--TCTGAATGGATCCACCATCTGCCA-TAATCCTATTC 65120 ||||||| | || | || |||| || || || || ||| | | ||| ||| Sbjct 3420437 -CTTCTGGGGAATGGCCTCAATGTTCTGGATTGAACC-CCTGCTGGAAATGATCTGGTTC 3420494 Query 65121 TTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 65180 || || || || | ||| || | ||||||||| | || | | ||| | || || Sbjct 3420495 TTCATATCGTCGTCCCACAAATCCAGCTCGGTTAAGTCCCTCAACAAATGATGGTTGACC 3420554 Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || || ||||| || |||| || | ||| |||||||| ||| | || || || || | | Sbjct 3420555 ACCTGGAATTCACCGGACAGAACGCGCCGGGTGTAAATGTTAGTTGTGTAGGGCTCGAAA 3420614 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 || || || || |||| ||||| ||||| ||||| || ||||| ||||| |||| | Sbjct 3420615 GATTCGTTGTTGCCCATTATTTGGGCAGTGGATGCCGTGGGCATGGGTGCAACCAGCAGG 3420674 Query 65301 CTATTTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 65359 || || | ||||| || | |||| || || || | ||||| ||| || || Sbjct 3420675 GAGTTCCTGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAATCCCACAGGTC 3420733 Query 65360 CGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATCCT 65417 || || | | | || ||||| || || || || || Sbjct 3420734 CGTGGG--CTTCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCC 3420791 Query 65418 ACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCG 65477 | || || || || || ||||| || || || ||||| || || || || || ||| Sbjct 3420792 TCGTAGGTTTCATAGGGACCTTCGACCTGCGCCAGCTCACAGCTGGCTTCCAAGGCGCCG 3420851 Query 65478 TAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGA 65537 || |||||||||||||| |||| || ||| | | |||||| ||| || |||| Sbjct 3420852 TAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCCTCGCTTTCGTATGGG 3420911 Query 65538 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 65597 | | |||||| | ||||| || || || || ||||| || || | || | ||| Sbjct 3420912 AATCGCATGAGAATCAGGGCGTCAGCGAAACCCTGGACACCGATGCCCACCGGACGATGC 3420971 Query 65598 CTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 65657 ||| |||||| | | | ||||| | |||||| | || || || || || || ||| Sbjct 3420972 CTCAAATTAGATTTCTTTGTCTCTGGCAGGGGATAAAAGTTGATGTCAATTATCTTGTTG 3421031 Query 65658 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCT 65717 ||||||||| || ||| || ||||||||||| |||||| | || || ||| Sbjct 3421032 AGATTTCTGGTAACCGTCTTGGTGACTTCCTTCAGTTTTTTGAAATCATA-CG-TCTTCT 3421089 Query 65718 A-----TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAG 65772 | || |||||||| | |||| |||||||| || || || || | ||| | | Sbjct 3421090 CGGGCGTGACGAACATGTTGAGGGCAATGGATGCCAGGTTGCACACTGCAATCTCGTCCG 3421149 Query 65773 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 65832 | | ||| | | || || ||||| | ||| || ||||||||||| || | ||| | Sbjct 3421150 GCGCGGAATACTCAACGATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAACATTCT 3421209 Query 65833 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAA 65892 | || || ||||| |||| |||| |||||| | || ||| | ||| | || ||||| | Sbjct 3421210 GCTGGTTGCTCTTCCTGTTGCACGAATCCTTGAACAGCATGTACGGATTGCCGGTTTCCA 3421269 Query 65893 TCTGAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATA-GATTTGTATCT 65950 ||| || || || || || ||| | | ||| | ||||| | | | || | | Sbjct 3421270 CCTGCGACTCAATGATGGCGAACCACAAGGACT-GTGCCTTGACCGTCCGGTTCGCACGG 3421328 Query 65951 CTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAA 66010 | | || | ||||| | || |||| ||||||||| || ||||| |||| || || Sbjct 3421329 CCCTCCTGCT-CGTATTGCGTGTACAGCTTTTCGAACTCATCGCCCCACACATCGTGCAG 3421387 Query 66011 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 66070 || || |||| | ||||||||||| |||||| || |||| ||| || |||||||| Sbjct 3421388 GCCGGGGCATTTGTGCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACGCGTTTCAT 3421447 Query 66071 AAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCC 66130 || ||||| || ||||| || || || | ||| | || | || ||||| || || Sbjct 3421448 GAAAAGATCGGGTATCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCCTCCTTGCC 3421507 Query 66131 TGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATAT 66190 || ||||| || || || |||||| | | | || | ||||| || |||| ||| || Sbjct 3421508 GGTGTTCTTCTTGAGTTCCAGGAACTCGAACACGTCCGAGTGCCAGGGCTCCAGGTAAAT 3421567 Query 66191 GGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATA 66250 ||| | | || ||||| ||| || |||||||| | ||| | || || || | Sbjct 3421568 GGCGAAGGCACCGGGCCGCTTGCCGCCACCCTGATCCACGTAACGTGCCACATTGTTGAA 3421627 Query 66251 AACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCC 66310 || || | ||| || | | |||||||| || ||||| || ||| |||| || | || Sbjct 3421628 GACCCTGAGCATGGGTACCAGGCCATTGGAGGTGCCATTCGTGCCGCAGATGGAGGTGCC 3421687 Query 66311 ACTTGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 66368 | || || || | | ||| || || || || |||||| ||| ||||| | Sbjct 3421688 CTTGGCCCGGATGCAATGGACATT--CAGTCCAATGCCTCCTGCCGATTTCGAGATCATG 3421745 Query 66369 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 66428 ||||| ||| | || | |||||||||| || || || ||||| | || || Sbjct 3421746 GCGCACTGTTCCACCGACTTGAAGATGCCCTCGATCGAGTCGGCCGTCATGGTCAGCAGG 3421805 Query 66429 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 66488 || || |||| ||| | ||| | || | || ||| | || || || ||||| Sbjct 3421806 AAGCACGACGACAGTTGCGGCCGATTTGTGGCTGCGGCAAAAAGCGTTGGCGAGGCGTGG 3421865 Query 66489 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGA 66548 || || | || || || || ||||| ||||| | || | || || ||| | | Sbjct 3421866 GTGAAGAACCGCTCCGACAGCAGGTTGTAGGTCTCCACGGCCGCATCGATGTCCTCTCCA 3421925 Query 66549 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 66608 || ||||| | || || ||||| | ||||||||| || | || ||||||| |||| Sbjct 3421926 TGGATTCCGATCGCCACGCGCATCAGCATGTGCTGCGGACGCTCGGCGATCTTTCCGTTT 3421985 Query 66609 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 66668 | |||| || ||| || ||| | |||||||||||||| |||||||| |||||| Sbjct 3421986 CTCTTCAGCAGGTACGAACGTTCGAGGGTTTTAAAACCAAAGTAGTTGTACCCAAAGTCA 3422045 Query 66669 CGTTCGTAAATAAT 66682 || || || || || Sbjct 3422046 CGATCATAGATTAT 3422059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658128134748360