Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq5074 181 9e-41 >seq5074 Length=4358836 Score = 181 bits (200), Expect = 9e-41 Identities = 290/417 (70%), Gaps = 6/417 (1%) Strand=Plus/Plus Query 20924 CAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCC 20983 ||| || || ||||| || ||| ||||| | ||| |||| ||||||||||||||| || Sbjct 1652330 CAGCGGCTCCACGTGATTCAGGTAGACGTGCGTGTCGCCCATGGTGTGCACAAAGTCGCC 1652389 Query 20984 CGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTT 21043 || |||| ||||| || || ||||||| | || || ||||||||| ||||||||| Sbjct 1652390 TGGCTTCAGACCCGTTACATGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTT 1652449 Query 21044 AAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCC 21103 || || || || || |||||||||||| ||| ||||||||||||||||| || || || Sbjct 1652450 GAAGGGCACGCCCAGACCCATGTCGGCGCTCCTTTGGTACAGCTGGCAGGAGAGTTCGCC 1652509 Query 21104 CCGAGCC------ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGC 21157 || | | || || ||||| || |||||| || || || ||||| || Sbjct 1652510 GCGCGTCTGGGAGACATAGAACTGCGCCAGGCAGTGACACGGCGGCAGGGCCATTTTCGG 1652569 Query 21158 GAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAAT 21217 | ||||| || ||||| || |||| | |||||||| || ||| | || Sbjct 1652570 AATGTCCGATGGATTCCATGCCGACATGATGATGCGCCTGTCCGAGGGATTATTCCGGAT 1652629 Query 21218 TAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCC 21277 || | ||| | |||| ||| || | |||| || ||||| | | ||| Sbjct 1652630 GGTGTCGATCACCTGTCGCAACTGATCGATGCCCTTTCCAGTGTAGTCGTCATCGCAGGT 1652689 Query 21278 CCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCC 21334 | |||||||| ||||| || | ||||||||| ||||||||||| |||||||| || Sbjct 1652690 GCCATACTCCGCTCCAAAGTGCCGCCACTGGAAGCCGTACACCGGGCCCAGATCTCC 1652746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427747695799920