Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5214 136 4e-27 seq4172 98.7 1e-15 seq5277 95.1 1e-14 seq4488 89.7 5e-13 >seq5214 Length=3698012 Score = 136 bits (150), Expect = 4e-27 Identities = 433/660 (66%), Gaps = 31/660 (5%) Strand=Plus/Plus Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684 |||||| |||||| || |||| |||||| || ||| | ||||| || ||| |||| | | Sbjct 3421105 TGTTGAGGGCAATGGATGCCAGGTTGCACACTGCAATCTCGTCCGGCGCGGAATACTCAA 3421164 Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGC 153744 | ||||| | |||||||||||||| || || ||| ||| || ||||| || | Sbjct 3421165 CGATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCC 3421224 Query 153745 GGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAA 153804 ||| || | |||||| | |||||||| || |||||||||| | || || || | Sbjct 3421225 TGTTGCACGAATCCTTGAACAGCATGTACGGATTGCCGGTTTCCACCTGCGACTCAATGA 3421284 Query 153805 TAGTACGCATCAATGTGACCGCGGGCATTTGATCG--CGAAAC---TGGCCCTTGTCTTC 153859 | | || | || ||| | | |||| || || | |||||| | || Sbjct 3421285 TGG--CGAACCACAAGGACTGTG---CCTTGACCGTCCGGTTCGCACGGCCCTCCTGCTC 3421339 Query 153860 GTAGTGTTTGTACCAGTATTCAAACTCATCACCAAACGTATTGTTAAGCTCGGGACATTC 153919 ||| || ||||| | ||| |||||||| || || || || || |||| |||| Sbjct 3421340 GTATTGCGTGTACAGCTTTTCGAACTCATCGCCCCACACATCGTGCAGGCCGGGGCATTT 3421399 Query 153920 GTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGG 153979 || ||||||||||| ||||| || || | | ||||| ||| || | |||||| Sbjct 3421400 GTGCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACGCGTTTCATGAAAAGATCGGG 3421459 Query 153980 AACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACG 154039 | ||| ||||||| | || ||||| || | || || |||| |||| Sbjct 3421460 TATCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTGTT---CTT 3421516 Query 154040 CATGTGT---AAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGC 154096 | || || | || || | | ||| | ||||| || |||| ||||| || || Sbjct 3421517 CTTGAGTTCCAGGAACTCGAACACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCGAAGGC 3421576 Query 154097 GCCTTTACGCTTGCCG---CCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAG 154153 || ||||||||| ||||||| |||| ||| ||| ||||||||| |||| || Sbjct 3421577 ACCGGGCCGCTTGCCGCCACCCTGATCCACGTAACGTGCCACATTGTTGAAGACCCTGAG 3421636 Query 154154 CATGGGTAGCAGACCGCTGGCGGTACCGTTTGT-----AGATTTAATCTTGCTGTTGCGG 154208 |||||||| ||| || ||| ||| || || || |||| | ||| || || Sbjct 3421637 CATGGGTACCAGGCCATTGGAGGTGCCATTCGTGCCGCAGATGGA--GGTGCCCTT--GG 3421692 Query 154209 CCTCGAACGCTGTTTACGTTTAATCCAATACCGCC-GCCGTGTTTGGAGATCATGGCGCA 154267 || || | || | || || | |||||| || || |||| ||| |||||||||||||| Sbjct 3421693 CC-CGGATGCAATGGACATTCAGTCCAATGCCTCCTGCCG-ATTTCGAGATCATGGCGCA 3421750 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || ||||| | || ||||| || ||||||||||| || Sbjct 3523194 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 3523135 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || ||||| |||||||||| |||||||| ||||| Sbjct 3523134 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 3523075 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | |||| | | ||| | || || | || || || Sbjct 3523074 ATTCCTTCTTTGTC-CTGAATCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGAC 3523016 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | |||||||| || | || || ||||| || ||||| Sbjct 3523015 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 3522968 >seq4172 Length=1033301 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| || ||||||| || || || || || |||||||||||| Sbjct 907423 GCCTCCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGA 907482 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||| || ||||| || || || | |||| ||| |||||||| || || Sbjct 907483 CAAAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGG 907542 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | || |||| ||||| || Sbjct 907543 AATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAAC 907602 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | || | |||||||| ||||| || || ||||| ||||||||| Sbjct 907603 CTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCATA 907651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||||| ||| || || | || ||||| ||||| ||||| || ||| Sbjct 906967 GCCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGA 907026 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || |||| || | || || ||||| || || || | |||| ||| |||||||| || | Sbjct 907027 CAGAGTGCGTCCA-TCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGG 907085 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || || || ||||| ||| || || | | || | || |||| ||||| | Sbjct 907086 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAA 907145 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | |||||||||||||| || || ||||| || ||||| Sbjct 907146 CCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || || || | || ||||| || || |||||||||||| Sbjct 907195 GCCTCCACGGAGACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAATCGGA 907254 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || || | || | ||||| ||||| || || || |||||| ||| |||||||| || | Sbjct 907255 CAAGGTACGTCCA-TCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGG 907313 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || || || ||||| ||| || || | | || | || |||| ||||| | Sbjct 907314 GAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAA 907373 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | |||||||| |||| || || ||||| || ||||| Sbjct 907374 CCTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 907422 >seq5277 Length=7425378 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||| ||| | || ||||||| || || || || || ||||| |||||| | Sbjct 1194378 CCTCCGCGTAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGAC 1194319 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| || | ||| || || ||| |||||| ||| ||||| || || || Sbjct 1194318 AGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1194259 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| |||||| || | | || | ||||| | ||||||||| Sbjct 1194258 ATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCACC 1194199 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | |||||||| || | || || ||||| |||||||| Sbjct 1194198 TCCAGTGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152 >seq4488 Length=533506 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || || || |||| || || ||||| || || Sbjct 135501 GTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCCTCCAGCTGCTTGCCG 135442 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| |||||||| || || ||||| || ||||| ||| | || | || Sbjct 135441 GCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC-TGAATCTTAGCCTT 135383 Query 139688 AGCTGT-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| ||||||||||| | ||| | ||||||||||| | || Sbjct 135382 CACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGT 135323 Query 139747 TTTTACGAATATTTGCAT 139764 ||| || || || ||||| Sbjct 135322 TTTCACAAAGATCTGCAT 135305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496030335856800