Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5214 405 7e-108 >seq5214 Length=3698012 Score = 405 bits (448), Expect = 7e-108 Identities = 1226/1872 (65%), Gaps = 30/1872 (2%) Strand=Plus/Plus Query 78708 CTTGTCCAATGTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 78766 ||| |||| ||||| ||||| | | || | || || || || || ||||||||||| | Sbjct 3420200 CTTATCCACGGTGAACTGAATCGCGTTCGCA-GCTGGCTTTGTGCGCAGATAGTACATGC 3420258 Query 78767 CCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCG 78826 | || || || || |||| ||| || || || ||| |||||| || ||| Sbjct 3420259 CGGTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGACGTCAGTTTGCCGTAGTTCG 3420318 Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886 | ||||| | ||| || || | || |||||||| |||||||| || || | ||||| | Sbjct 3420319 GCTCTGCCACATGAATGTTGAACGACTGACTTTGGTCGATGAACGCACCACGATCTGCGG 3420378 Query 78887 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATA 78945 ||||||| || | | ||| | |||||||| | || || |||| |||| | Sbjct 3420379 CCATTTTAATTGTGGACTTCACGGAGATTTCCCACACGGTCTTGTAAAGATCGCGAAC-- 3420436 Query 78946 TCTTCTGG---AAGGTTTGTAT--TCTGAATGGATCCACCATCTGCCA-TAATCCTATTC 78999 ||||||| | || | || |||| || || || || ||| | | ||| ||| Sbjct 3420437 -CTTCTGGGGAATGGCCTCAATGTTCTGGATTGAACC-CCTGCTGGAAATGATCTGGTTC 3420494 Query 79000 TTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACT 79059 || || || || | ||| || | ||||||||| | || | | ||| | || || Sbjct 3420495 TTCATATCGTCGTCCCACAAATCCAGCTCGGTTAAGTCCCTCAACAAATGATGGTTGACC 3420554 Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || || ||||| || |||| || | ||| |||||||| ||| | || || || || | Sbjct 3420555 ACCTGGAATTCACCGGACAGAACGCGCCGGGTGTAAATGTTAGTTGTGTAGGGCTCGAAA 3420614 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 ||||| || || |||| ||||| ||||| |||||||| ||||| ||||| |||| | Sbjct 3420615 GATTCGTTGTTGCCCATTATTTGGGCAGTGGATGCCGTGGGCATGGGTGCAACCAGCAGG 3420674 Query 79180 CTATTTCTAAGACCGTA-TGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATC 79238 || || | ||||| || | |||| || || || | ||||||||| || || Sbjct 3420675 GAGTTCCTGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAATCCCACAGGTC 3420733 Query 79239 AGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGT 79298 | || | ||| | || || || ||||| || || || || || Sbjct 3420734 CGTGGGCTTCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCCTC 3420793 Query 79299 GTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTA 79358 ||| |||||||| || ||||| | || | ||||| || || || || || ||||| Sbjct 3420794 GTAGGTTTCATAGGGACCTTCGACCTGCGCCAGCTCACAGCTGGCTTCCAAGGCGCCGTA 3420853 Query 79359 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATA 79418 |||||||||||||| |||| || ||| | | ||||| ||| || |||| | Sbjct 3420854 GTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCCTCGCTTTCGTATGGGAA 3420913 Query 79419 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 79478 | |||||| | ||||| || || || || ||||| || || | || | ||| || Sbjct 3420914 TCGCATGAGAATCAGGGCGTCAGCGAAACCCTGGACACCGATGCCCACCGGACGATGCCT 3420973 Query 79479 CTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 79538 | |||||| | | | ||||| | |||||| | || || || || || || ||||| Sbjct 3420974 CAAATTAGATTTCTTTGTCTCTGGCAGGGGATAAAAGTTGATGTCAATTATCTTGTTGAG 3421033 Query 79539 ATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCATCTA- 79597 ||| ||| | ||| || ||||| ||||| |||||| | |||| ||| Sbjct 3421034 ATTTCTGGTAACCGTCTTGGTGACTTCCTTCAGTTTTTTGAAATCATA-CGTCT-TCTCG 3421091 Query 79598 ----TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCA 79653 | || |||||||| | || | |||||||| || || || || | ||| | | Sbjct 3421092 GGCGTGACGAACATGTTGAGGGCAATGGATGCCAGGTTGCACACTGCAATCTCGTCCGGC 3421151 Query 79654 TCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGT 79713 | | ||| | | ||||| ||||| | || || ||||| ||||| || | ||| || Sbjct 3421152 GCGGAATACTCAACGATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAACATTCTGC 3421211 Query 79714 TGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATC 79773 || || ||||| |||| |||| |||||| | || ||| ||||| | || ||||| | | Sbjct 3421212 TGGTTGCTCTTCCTGTTGCACGAATCCTTGAACAGCATGTACGGATTGCCGGTTTCCACC 3421271 Query 79774 TGAGATTCTATAATCGCTTTCCAGACG-ACTCGAGCCTTTATTATAGACTT-GTATCTCT 79831 || || || || || || ||| | | ||| | ||||| | | || | | | Sbjct 3421272 TGCGACTCAATGATGGCGAACCACAAGGACT-GTGCCTTGACCGTCCGGTTCGCACGGCC 3421330 Query 79832 TTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATC 79891 | || | ||||||| || || | ||||||||| || ||||| ||||||| | | Sbjct 3421331 CTCCTGCT-CGTATTGCGTGTACAGCTTTTCGAACTCATCGCCCCACACATCGTGCAGGC 3421389 Query 79892 CAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAA 79951 | || |||| || |||||||||| |||||| || || | ||| || |||||||| | Sbjct 3421390 CGGGGCATTTGTGCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACGCGTTTCATGA 3421449 Query 79952 AGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTG 80011 | ||||| || ||||| || || || ||||| | || | || |||||| || || | Sbjct 3421450 AAAGATCGGGTATCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCCTCCTTGCCGG 3421509 Query 80012 TATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGG 80071 | ||||| || || || |||||| | | | || || ||||| || |||| ||| |||| Sbjct 3421510 TGTTCTTCTTGAGTTCCAGGAACTCGAACACGTCCGAGTGCCAGGGCTCCAGGTAAATGG 3421569 Query 80072 CCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAA 80131 | | | || || || ||| || |||||||| | ||| | || || || | | Sbjct 3421570 CGAAGGCACCGGGCCGCTTGCCGCCACCCTGATCCACGTAACGTGCCACATTGTTGAAGA 3421629 Query 80132 CTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCAC 80191 | || | ||| || | | |||||||| || ||||| || ||| |||| || | || Sbjct 3421630 CCCTGAGCATGGGTACCAGGCCATTGGAGGTGCCATTCGTGCCGCAGATGGAGGTGCCCT 3421689 Query 80192 TGGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGC 80249 |||| || || | | ||| | | || || || |||||| ||| ||||| | || Sbjct 3421690 TGGCCCGGATGCAATGGACATTCA--GTCCAATGCCTCCTGCCGATTTCGAGATCATGGC 3421747 Query 80250 GCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAA 80309 ||| ||| | || | |||||||||| || || | ||||| | || || || Sbjct 3421748 GCACTGTTCCACCGACTTGAAGATGCCCTCGATCGAGTCGGCCGTCATGGTCAGCAGGAA 3421807 Query 80310 ACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGT 80369 || |||| ||| | ||| | || | || ||| | || || || ||||| || Sbjct 3421808 GCACGACGACAGTTGCGGCCGATTTGTGGCTGCGGCAAAAAGCGTTGGCGAGGCGTGGGT 3421867 Query 80370 AAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATG 80429 || | || ||||| || ||||| ||||| | || | || || ||| | ||| Sbjct 3421868 GAAGAACCGCTCCGACAGCAGGTTGTAGGTCTCCACGGCCGCATCGATGTCCTCTCCATG 3421927 Query 80430 AATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTAT 80489 ||||| | ||| || ||||| | ||||||||| || | || ||||||| ||| | Sbjct 3421928 GATTCCGATCGCCACGCGCATCAGCATGTGCTGCGGACGCTCGGCGATCTTTCCGTTTCT 3421987 Query 80490 TTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 80549 |||| || ||| || ||| | |||||||||||||| |||||||| |||||| || Sbjct 3421988 CTTCAGCAGGTACGAACGTTCGAGGGTTTTAAAACCAAAGTAGTTGTACCCAAAGTCACG 3422047 Query 80550 TTCGTAAATAAT 80561 || || || || Sbjct 3422048 ATCATAGATTAT 3422059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718220056483560