Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq4172 96.9 3e-15 seq5277 82.4 6e-11 >seq4172 Length=1033301 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||||||||| || | | ||||||||| | |||| |||||| || | || |||||||| Sbjct 907195 GCCTCCACGGAGACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAATCGGA 907254 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| |||||| | || |||| || || ||||| || ||||| ||||| ||||| | || Sbjct 907255 CAAGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGG 907314 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | || || | | | || ||| || ||| || Sbjct 907315 AATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAAC 907374 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || || ||||| ||||| || || ||||| Sbjct 907375 CTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 907422 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | | ||||| || | || ||||| || | || |||||||| Sbjct 907423 GCCTCCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGA 907482 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| |||||| |||| |||| || || ||||| |||||||| ||||| ||||| | || Sbjct 907483 CAAAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGG 907542 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | || || | | | || ||| || ||| || Sbjct 907543 AATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAAC 907602 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || || | ||| ||||| ||||||||||| || Sbjct 907603 CTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCATATT 907653 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 |||||||||||| | | |||||||| | |||| ||||||||| | ||||| ||||| Sbjct 906967 GCCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGA 907026 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 || || ||| | || |||| || || ||||| |||||||| ||||| ||||| | || Sbjct 907027 CAGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGG 907086 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || || || || |||| | || || | | | || ||| || ||| || Sbjct 907087 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAAC 907146 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| | ||| || || || || ||||| Sbjct 907147 CTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194 >seq5277 Length=7425378 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | ||||| ||||| | || ||| | || || | || |||||||||||| Sbjct 1193658 TCCTTTTGGATGTTGTAGTCGGATAGGGTTCGTCCATCCTCAAGCTGCTTGCCGGCAAAA 1193599 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCT 43037 ||||||||||| ||||| | || | || || || || ||| ||| | || || | Sbjct 1193598 ATCAATCGCTGCTGATCTGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGCCTTCACATT 1193540 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| || || || || || || | || || ||||||||||||| || ||||| Sbjct 1193539 CTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTTCCGGTTAAGGTCTTCAC 1193480 Query 43098 AAAAATTTGCAT 43109 || |||||||| Sbjct 1193479 GAAGATTTGCAT 1193468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381344366322882