Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq5214 351 1e-91 >seq5214 Length=3698012 Score = 351 bits (388), Expect = 1e-91 Identities = 1186/1836 (65%), Gaps = 25/1836 (1%) Strand=Plus/Plus Query 70824 GGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATG 70883 |||||| || || |||||||||||||| || || || || |||| |||||| || Sbjct 3420234 GGCTTT-GTGCGCAGATAGTACATGCCGGTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTG 3420292 Query 70884 CATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTG 70943 || ||| |||||| ||| | || || || | ||||| || | |||||||||||| Sbjct 3420293 AATGGACGTCAGTTTGCCGTAGTTCGGCTCTGCCACATGAATGTTGAACGACTGACTTTG 3420352 Query 70944 ATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCA 71003 |||||||| || || | ||||| |||||||| || | | ||| | |||||||| Sbjct 3420353 GTCGATGAACGCACCACGATCTGCGGCCATTTTAATTGTGGACTTCACGGAGATTTCCCA 3420412 Query 71004 AATAGTTTTATAAAC-TCGCTTAATATCTTCTGG---AAGGTTTGTAT--TCTGAATGGA 71057 | || || |||| |||| | ||||||| | || | || |||| || || Sbjct 3420413 CACGGTCTTGTAAAGATCGCGAAC---CTTCTGGGGAATGGCCTCAATGTTCTGGATTGA 3420469 Query 71058 TCCACCATCTGCAA-TAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTA 71116 || || ||| || | ||| || || || || || | ||| || | |||||||| Sbjct 3420470 ACC-CCTGCTGGAAATGATCTGGTTCTTCATATCGTCGTCCCACAAATCCAGCTCGGTTA 3420528 Query 71117 AAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGT 71176 | | || | | |||| | || || || || ||||| || |||| || | || |||| Sbjct 3420529 AGTCCCTCAACAAATGATGGTTGACCACCTGGAATTCACCGGACAGAACGCGCCGGGTGT 3420588 Query 71177 AAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 71236 |||| ||| | || || || || | || || || || |||| ||||| ||||| |||| Sbjct 3420589 AAATGTTAGTTGTGTAGGGCTCGAAAGATTCGTTGTTGCCCATTATTTGGGCAGTGGATG 3420648 Query 71237 CAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATG-TGATCGGATTTTATCT 71295 | || ||||| ||||| |||| || || || | ||| || || | | || || Sbjct 3420649 CCGTGGGCATGGGTGCAACCAGCAGGGAGTTCCTGACACCGTGCTGCTTG-ATGGACTCC 3420707 Query 71296 TTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNN 71355 || || | ||||| ||| || |||| || Sbjct 3420708 TTCAGTTTCTGCCAATCCCACAGGTCCGTGGGCTTCTTGTCCCACATGTCGTACTGCAGA 3420767 Query 71356 ATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGT 71415 || || || || || || | || || || || || ||||| | || || Sbjct 3420768 ATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCATAGGGACCTTCGACCTGCGCCAGC 3420827 Query 71416 TCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCT 71475 ||||| || || || || || || || |||||||||||||| |||| || ||| | | Sbjct 3420828 TCACAGCTGGCTTCCAAGGCGCCGTAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGA 3420887 Query 71476 TGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 71535 |||||| ||| || |||| | | |||||| | ||||| || || || || Sbjct 3420888 CCGGCTTCCTCGCTTTCGTATGGGAATCGCATGAGAATCAGGGCGTCAGCGAAACCCTGG 3420947 Query 71536 ACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAA 71595 || || || || | || | || ||| |||||| | | | ||||| | |||||| Sbjct 3420948 ACACCGATGCCCACCGGACGATGCCTCAAATTAGATTTCTTTGTCTCTGGCAGGGGATAA 3421007 Query 71596 TAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGT 71655 | || || || || || || |||||||||||| | ||| || ||||| ||| Sbjct 3421008 AAGTTGATGTCAATTATCTTGTTGAGATTTCTGGTAACCGTCTTGGTGACTTCCTTCAGT 3421067 Query 71656 TTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGA 71712 || |||||| | || || | || |||| ||| | ||||| |||||||| Sbjct 3421068 TTTTTGAAATCATACGTCTTCTCGGGCGTGACGAACATGTTGAGGGCAATGGATGCCAGG 3421127 Query 71713 TTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTA 71772 || || || || | ||| | | ||| ||| | | ||||| ||||| | ||| || Sbjct 3421128 TTGCACACTGCAATCTCGTCCGGCGCGGAATACTCAACGATTTCGGTGCACAAATTGCTG 3421187 Query 71773 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 71832 ||||||||||| || | ||| || || || ||||| |||| |||| |||||| | || Sbjct 3421188 CACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCCTGTTGCACGAATCCTTGAACAGC 3421247 Query 71833 ATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG-ACTCGAGC 71891 || ||||| | || ||||| | ||| || || || || || ||| | | ||| | || Sbjct 3421248 ATGTACGGATTGCCGGTTTCCACCTGCGACTCAATGATGGCGAACCACAAGGACT-GTGC 3421306 Query 71892 CTTTATTATATTCTT-GTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACT 71950 ||| | | || | | | | || | ||||||| || || | |||||||| Sbjct 3421307 CTTGACCGTCCGGTTCGCACGGCCCTCCTGCT-CGTATTGCGTGTACAGCTTTTCGAACT 3421365 Query 71951 CGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTC 72010 | || ||||| ||| || | || || |||| | ||||||||||| ||||| || | Sbjct 3421366 CATCGCCCCACACATCGTGCAGGCCGGGGCATTTGTGCGGACACATCAGCGACCAGTCCC 3421425 Query 72011 CATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 72070 | | | | || |||||||| || ||||| || ||||| || || || ||||| | Sbjct 3421426 CGTTGGCCTCGACGCGTTTCATGAAAAGATCGGGTATCCAGAGGGCGTAGAAGAGATCGC 3421485 Query 72071 TGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 72130 || | || |||||| || || || ||||| || || || |||||| | | | || | Sbjct 3421486 GGGCGCGATTCTCCTCCTTGCCGGTGTTCTTCTTGAGTTCCAGGAACTCGAACACGTCCG 3421545 Query 72131 AATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTA 72190 | ||||| || |||| ||| ||||| | | || ||||| ||| || |||||||| | Sbjct 3421546 AGTGCCAGGGCTCCAGGTAAATGGCGAAGGCACCGGGCCGCTTGCCGCCACCCTGATCCA 3421605 Query 72191 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCAT 72250 ||| | || || || | || || | ||| || | | |||||||| | |||| Sbjct 3421606 CGTAACGTGCCACATTGTTGAAGACCCTGAGCATGGGTACCAGGCCATTGGAGGTGCCAT 3421665 Query 72251 TGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCC 72308 | || ||| |||| || | || |||| || || | || ||| || || || || Sbjct 3421666 TCGTGCCGCAGATGGAGGTGCCCTTGGCCCGGATGCAATGGACATT--CAGTCCAATGCC 3421723 Query 72309 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACT 72368 |||||| ||| ||||| | ||||| ||| | || | |||||||||| || Sbjct 3421724 TCCTGCCGATTTCGAGATCATGGCGCACTGTTCCACCGACTTGAAGATGCCCTCGATCGA 3421783 Query 72369 ATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATT 72428 || || ||||| | || || || || |||| ||| | ||| | || | || Sbjct 3421784 GTCGGCCGTCATGGTCAGCAGGAAGCACGACGACAGTTGCGGCCGATTTGTGGCTGCGGC 3421843 Query 72429 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 72488 ||| | || || || ||||| || || | || ||||| || ||||| ||||| | Sbjct 3421844 AAAAAGCGTTGGCGAGGCGTGGGTGAAGAACCGCTCCGACAGCAGGTTGTAGGTCTCCAC 3421903 Query 72489 AGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGG 72548 || | || || ||| | ||| ||||| | ||| || ||||| | ||| ||||| || Sbjct 3421904 GGCCGCATCGATGTCCTCTCCATGGATTCCGATCGCCACGCGCATCAGCATGTGCTGCGG 3421963 Query 72549 TCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 72608 | || ||||||| ||| | |||| || ||| || ||| | ||||||||||| Sbjct 3421964 ACGCTCGGCGATCTTTCCGTTTCTCTTCAGCAGGTACGAACGTTCGAGGGTTTTAAAACC 3422023 Query 72609 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||| |||||||| |||||| || || || || || Sbjct 3422024 AAAGTAGTTGTACCCAAAGTCACGATCATAGATTAT 3422059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671093654816040