Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq5214 351 1e-91
>seq5214
Length=3698012
Score = 351 bits (388), Expect = 1e-91
Identities = 1186/1836 (65%), Gaps = 25/1836 (1%)
Strand=Plus/Plus
Query 70824 GGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATG 70883
|||||| || || |||||||||||||| || || || || |||| |||||| ||
Sbjct 3420234 GGCTTT-GTGCGCAGATAGTACATGCCGGTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTG 3420292
Query 70884 CATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTG 70943
|| ||| |||||| ||| | || || || | ||||| || | ||||||||||||
Sbjct 3420293 AATGGACGTCAGTTTGCCGTAGTTCGGCTCTGCCACATGAATGTTGAACGACTGACTTTG 3420352
Query 70944 ATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCA 71003
|||||||| || || | ||||| |||||||| || | | ||| | ||||||||
Sbjct 3420353 GTCGATGAACGCACCACGATCTGCGGCCATTTTAATTGTGGACTTCACGGAGATTTCCCA 3420412
Query 71004 AATAGTTTTATAAAC-TCGCTTAATATCTTCTGG---AAGGTTTGTAT--TCTGAATGGA 71057
| || || |||| |||| | ||||||| | || | || |||| || ||
Sbjct 3420413 CACGGTCTTGTAAAGATCGCGAAC---CTTCTGGGGAATGGCCTCAATGTTCTGGATTGA 3420469
Query 71058 TCCACCATCTGCAA-TAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTA 71116
|| || ||| || | ||| || || || || || | ||| || | ||||||||
Sbjct 3420470 ACC-CCTGCTGGAAATGATCTGGTTCTTCATATCGTCGTCCCACAAATCCAGCTCGGTTA 3420528
Query 71117 AAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGT 71176
| | || | | |||| | || || || || ||||| || |||| || | || ||||
Sbjct 3420529 AGTCCCTCAACAAATGATGGTTGACCACCTGGAATTCACCGGACAGAACGCGCCGGGTGT 3420588
Query 71177 AAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 71236
|||| ||| | || || || || | || || || || |||| ||||| ||||| ||||
Sbjct 3420589 AAATGTTAGTTGTGTAGGGCTCGAAAGATTCGTTGTTGCCCATTATTTGGGCAGTGGATG 3420648
Query 71237 CAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATG-TGATCGGATTTTATCT 71295
| || ||||| ||||| |||| || || || | ||| || || | | || ||
Sbjct 3420649 CCGTGGGCATGGGTGCAACCAGCAGGGAGTTCCTGACACCGTGCTGCTTG-ATGGACTCC 3420707
Query 71296 TTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNN 71355
|| || | ||||| ||| || |||| ||
Sbjct 3420708 TTCAGTTTCTGCCAATCCCACAGGTCCGTGGGCTTCTTGTCCCACATGTCGTACTGCAGA 3420767
Query 71356 ATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGT 71415
|| || || || || || | || || || || || ||||| | || ||
Sbjct 3420768 ATTCCCTTGCTCACGGGGCTGCCCTCGTAGGTTTCATAGGGACCTTCGACCTGCGCCAGC 3420827
Query 71416 TCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCT 71475
||||| || || || || || || || |||||||||||||| |||| || ||| | |
Sbjct 3420828 TCACAGCTGGCTTCCAAGGCGCCGTAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGA 3420887
Query 71476 TGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGA 71535
|||||| ||| || |||| | | |||||| | ||||| || || || ||
Sbjct 3420888 CCGGCTTCCTCGCTTTCGTATGGGAATCGCATGAGAATCAGGGCGTCAGCGAAACCCTGG 3420947
Query 71536 ACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAA 71595
|| || || || | || | || ||| |||||| | | | ||||| | ||||||
Sbjct 3420948 ACACCGATGCCCACCGGACGATGCCTCAAATTAGATTTCTTTGTCTCTGGCAGGGGATAA 3421007
Query 71596 TAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGT 71655
| || || || || || || |||||||||||| | ||| || ||||| |||
Sbjct 3421008 AAGTTGATGTCAATTATCTTGTTGAGATTTCTGGTAACCGTCTTGGTGACTTCCTTCAGT 3421067
Query 71656 TTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGA 71712
|| |||||| | || || | || |||| ||| | ||||| ||||||||
Sbjct 3421068 TTTTTGAAATCATACGTCTTCTCGGGCGTGACGAACATGTTGAGGGCAATGGATGCCAGG 3421127
Query 71713 TTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTA 71772
|| || || || | ||| | | ||| ||| | | ||||| ||||| | ||| ||
Sbjct 3421128 TTGCACACTGCAATCTCGTCCGGCGCGGAATACTCAACGATTTCGGTGCACAAATTGCTG 3421187
Query 71773 CACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 71832
||||||||||| || | ||| || || || ||||| |||| |||| |||||| | ||
Sbjct 3421188 CACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCCTGTTGCACGAATCCTTGAACAGC 3421247
Query 71833 ATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG-ACTCGAGC 71891
|| ||||| | || ||||| | ||| || || || || || ||| | | ||| | ||
Sbjct 3421248 ATGTACGGATTGCCGGTTTCCACCTGCGACTCAATGATGGCGAACCACAAGGACT-GTGC 3421306
Query 71892 CTTTATTATATTCTT-GTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACT 71950
||| | | || | | | | || | ||||||| || || | ||||||||
Sbjct 3421307 CTTGACCGTCCGGTTCGCACGGCCCTCCTGCT-CGTATTGCGTGTACAGCTTTTCGAACT 3421365
Query 71951 CGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTC 72010
| || ||||| ||| || | || || |||| | ||||||||||| ||||| || |
Sbjct 3421366 CATCGCCCCACACATCGTGCAGGCCGGGGCATTTGTGCGGACACATCAGCGACCAGTCCC 3421425
Query 72011 CATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 72070
| | | | || |||||||| || ||||| || ||||| || || || ||||| |
Sbjct 3421426 CGTTGGCCTCGACGCGTTTCATGAAAAGATCGGGTATCCAGAGGGCGTAGAAGAGATCGC 3421485
Query 72071 TGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 72130
|| | || |||||| || || || ||||| || || || |||||| | | | || |
Sbjct 3421486 GGGCGCGATTCTCCTCCTTGCCGGTGTTCTTCTTGAGTTCCAGGAACTCGAACACGTCCG 3421545
Query 72131 AATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTA 72190
| ||||| || |||| ||| ||||| | | || ||||| ||| || |||||||| |
Sbjct 3421546 AGTGCCAGGGCTCCAGGTAAATGGCGAAGGCACCGGGCCGCTTGCCGCCACCCTGATCCA 3421605
Query 72191 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCAT 72250
||| | || || || | || || | ||| || | | |||||||| | ||||
Sbjct 3421606 CGTAACGTGCCACATTGTTGAAGACCCTGAGCATGGGTACCAGGCCATTGGAGGTGCCAT 3421665
Query 72251 TGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCC 72308
| || ||| |||| || | || |||| || || | || ||| || || || ||
Sbjct 3421666 TCGTGCCGCAGATGGAGGTGCCCTTGGCCCGGATGCAATGGACATT--CAGTCCAATGCC 3421723
Query 72309 CCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACT 72368
|||||| ||| ||||| | ||||| ||| | || | |||||||||| ||
Sbjct 3421724 TCCTGCCGATTTCGAGATCATGGCGCACTGTTCCACCGACTTGAAGATGCCCTCGATCGA 3421783
Query 72369 ATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATT 72428
|| || ||||| | || || || || |||| ||| | ||| | || | ||
Sbjct 3421784 GTCGGCCGTCATGGTCAGCAGGAAGCACGACGACAGTTGCGGCCGATTTGTGGCTGCGGC 3421843
Query 72429 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAAT 72488
||| | || || || ||||| || || | || ||||| || ||||| ||||| |
Sbjct 3421844 AAAAAGCGTTGGCGAGGCGTGGGTGAAGAACCGCTCCGACAGCAGGTTGTAGGTCTCCAC 3421903
Query 72489 AGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGG 72548
|| | || || ||| | ||| ||||| | ||| || ||||| | ||| ||||| ||
Sbjct 3421904 GGCCGCATCGATGTCCTCTCCATGGATTCCGATCGCCACGCGCATCAGCATGTGCTGCGG 3421963
Query 72549 TCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACC 72608
| || ||||||| ||| | |||| || ||| || ||| | |||||||||||
Sbjct 3421964 ACGCTCGGCGATCTTTCCGTTTCTCTTCAGCAGGTACGAACGTTCGAGGGTTTTAAAACC 3422023
Query 72609 AAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644
||| |||||||| |||||| || || || || ||
Sbjct 3422024 AAAGTAGTTGTACCCAAAGTCACGATCATAGATTAT 3422059
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671093654816040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |