Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq5214 102 8e-17
seq5277 91.5 1e-13
seq4172 86.0 6e-12
>seq5214
Length=3698012
Score = 102 bits (112), Expect = 8e-17
Identities = 426/657 (65%), Gaps = 29/657 (4%)
Strand=Plus/Plus
Query 157049 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACT 157108
|||| |||||| || || || || || || ||| | ||||| |||||| |||| | ||
Sbjct 3421107 TTGAGGGCAATGGATGCCAGGTTGCACACTGCAATCTCGTCCGGCGCGGAATACTCAACG 3421166
Query 157109 ATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGG 157168
||||| | |||||||||||||| || || || ||| || ||||| || | |
Sbjct 3421167 ATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCCTG 3421226
Query 157169 TTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATG 157228
||||| | |||||| | | ||||||||| |||||||||| | || || ||||||
Sbjct 3421227 TTGCACGAATCCTTGAACAGCATGTACGGATTGCCGGTTTCCACCTGCGACTCAATGATG 3421286
Query 157229 TTGCGC----ATTAATGTAACCGCGGGCAT-TTGCTCGCGAAACTGGCCTTTATCCTCGT 157283
| | | | ||| || | | | | |||| || |||| | | |||||
Sbjct 3421287 GCGAACCACAAGGACTGT-GCCTTGACCGTCCGGTTCGC---AC-GGCCCTCCTGCTCGT 3421341
Query 157284 AATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCGT 157343
| || ||||| | ||| || ||||| || || ||||| || || || | ||
Sbjct 3421342 ATTGCGTGTACAGCTTTTCGAACTCATCGCCCCACACATCGTGCAGGCCGGGGCATTTGT 3421401
Query 157344 TAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATATCGGGAA 157403
|||||||| | ||||| ||||| | || ||||||||||| || | |||||| |
Sbjct 3421402 GCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACGCGTTTCATGAAAAGATCGGGTA 3421461
Query 157404 CCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGCA 157463
||| | |||| | | ||| || || | || || |||| || ||| |
Sbjct 3421462 TCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTG-TTCTTCTTG 3421520
Query 157464 TGTGTAA--AACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCC 157521
|| | ||| || | | ||| | ||||| || || | ||| | || ||| ||
Sbjct 3421521 AGTTCCAGGAAC-TCGAACACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCGAAGGCACC 3421579
Query 157522 TTTTCGCTT---GCCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCAT 157578
||||| |||||| |||||||||| ||| ||| ||| || || || | |||||
Sbjct 3421580 GGGCCGCTTGCCGCCACCCTGATCCACGTAACGTGCCACATTGTTGAAGACCCTGAGCAT 3421639
Query 157579 TGGTAGCAGTCCGCTGGCGGTGCCGTTCGT-----AGATTTTATTTTGCTGTTGCGGCCG 157633
|||| ||| || ||| |||||| ||||| ||| | ||| || ||||
Sbjct 3421640 GGGTACCAGGCCATTGGAGGTGCCATTCGTGCCGCAGA--TGGAGGTGCCCTT--GGCC- 3421694
Query 157634 CGTACGCTGTTCACGTTCAATCCAATACCGCC-GCCGTGTTTAGAGATCATGGCGCA 157689
|| | || | || |||| |||||| || || |||| ||| ||||||||||||||
Sbjct 3421695 CGGATGCAATGGACATTCAGTCCAATGCCTCCTGCCG-ATTTCGAGATCATGGCGCA 3421750
Score = 95.1 bits (104), Expect = 1e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089
||||| || || || ||||| |||||||||| |||||||| ||||| || |||||||||
Sbjct 3523122 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 3523063
Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149
|| ||| || ||| | | ||| | || |||| ||||| || |||| ||| |
Sbjct 3523062 TCCTGAATCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATG 3523003
Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||||||| || | || || ||||| || |||||
Sbjct 3523002 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 3522968
Score = 86.0 bits (94), Expect = 6e-12
Identities = 111/151 (74%), Gaps = 2/151 (1%)
Strand=Plus/Plus
Query 156175 TGTGCGAAAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGA 156234
|||||| | ||||||||||||||| |||||||| ||||| ||| | ||| | ||
Sbjct 3420239 TGTGCGCAGATAGTACATGCCGGTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGA 3420298
Query 156235 CGCCATTTTAGGCAAAG-TAGGGTTTGCCATGTACACGTTGAACGATTGACTTTGATCGA 156293
|| || ||| | | || | || | ||||| | | ||||||||| |||||||| ||||
Sbjct 3420299 CGTCAGTTT-GCCGTAGTTCGGCTCTGCCACATGAATGTTGAACGACTGACTTTGGTCGA 3420357
Query 156294 TAAATGCTCCCCTGTCTGCTGCCATTTCAAT 156324
| || || || | ||||| ||||||| |||
Sbjct 3420358 TGAACGCACCACGATCTGCGGCCATTTTAAT 3420388
>seq5277
Length=7425378
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| || || | ||| | ||| || |||| || |||||||| || ||||||||||||
Sbjct 1193011 GCCACCACGGAGACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGA 1192952
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | ||||| || || || || ||| ||||||| || |||||||| || ||
Sbjct 1192951 AAGAGTACGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGG 1192892
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
||||| || ||||| ||| || || | | || | ||| || | || || ||
Sbjct 1192891 AATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGAC 1192832
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | ||| | |||||||| ||||| || || || || || |||||
Sbjct 1192831 CTCCAAAGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1192784
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| || || | |||||| || || || | || || || || || |||||||||||
Sbjct 1193239 GCCACCACGAAGACGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGA 1193180
Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
|| || | || || ||||| ||||||||| | || ||||| |||||||| || ||
Sbjct 1193179 CAACGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGG 1193120
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|||||||| ||||| || || || | | || | || || | ||||| ||
Sbjct 1193119 GATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAAC 1193060
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | ||| | |||||||| |||| || || ||||| || |||||
Sbjct 1193059 CTCCAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1193012
>seq4172
Length=1033301
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
|||||| || | ||||| ||| ||||| | || || || ||||| |||||||| |||
Sbjct 906967 GCCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGA 907026
Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075
|| |||| || | || || || || || || || | |||| ||| |||||||| || |
Sbjct 907027 CAGAGTGCGTCCA-TCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGG 907085
Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135
| || || || ||||| || || || | | || | || || | || || |
Sbjct 907086 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAA 907145
Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
| || | ||| | |||||||||||||| || || ||||| || |||||
Sbjct 907146 CCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506979992735280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |