Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq5214 102 8e-17 seq5277 91.5 1e-13 seq4172 86.0 6e-12 >seq5214 Length=3698012 Score = 102 bits (112), Expect = 8e-17 Identities = 426/657 (65%), Gaps = 29/657 (4%) Strand=Plus/Plus Query 157049 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACT 157108 |||| |||||| || || || || || || ||| | ||||| |||||| |||| | || Sbjct 3421107 TTGAGGGCAATGGATGCCAGGTTGCACACTGCAATCTCGTCCGGCGCGGAATACTCAACG 3421166 Query 157109 ATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGG 157168 ||||| | |||||||||||||| || || || ||| || ||||| || | | Sbjct 3421167 ATTTCGGTGCACAAATTGCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCCTG 3421226 Query 157169 TTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATG 157228 ||||| | |||||| | | ||||||||| |||||||||| | || || |||||| Sbjct 3421227 TTGCACGAATCCTTGAACAGCATGTACGGATTGCCGGTTTCCACCTGCGACTCAATGATG 3421286 Query 157229 TTGCGC----ATTAATGTAACCGCGGGCAT-TTGCTCGCGAAACTGGCCTTTATCCTCGT 157283 | | | | ||| || | | | | |||| || |||| | | ||||| Sbjct 3421287 GCGAACCACAAGGACTGT-GCCTTGACCGTCCGGTTCGC---AC-GGCCCTCCTGCTCGT 3421341 Query 157284 AATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCGT 157343 | || ||||| | ||| || ||||| || || ||||| || || || | || Sbjct 3421342 ATTGCGTGTACAGCTTTTCGAACTCATCGCCCCACACATCGTGCAGGCCGGGGCATTTGT 3421401 Query 157344 TAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATATCGGGAA 157403 |||||||| | ||||| ||||| | || ||||||||||| || | |||||| | Sbjct 3421402 GCGGACACATCAGCGACCAGTCCCCGTTGGCCTCGACGCGTTTCATGAAAAGATCGGGTA 3421461 Query 157404 CCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGCA 157463 ||| | |||| | | ||| || || | || || |||| || ||| | Sbjct 3421462 TCCAGAGGGCGTAGAAGAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTG-TTCTTCTTG 3421520 Query 157464 TGTGTAA--AACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCTCC 157521 || | ||| || | | ||| | ||||| || || | ||| | || ||| || Sbjct 3421521 AGTTCCAGGAAC-TCGAACACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCGAAGGCACC 3421579 Query 157522 TTTTCGCTT---GCCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCAT 157578 ||||| |||||| |||||||||| ||| ||| ||| || || || | ||||| Sbjct 3421580 GGGCCGCTTGCCGCCACCCTGATCCACGTAACGTGCCACATTGTTGAAGACCCTGAGCAT 3421639 Query 157579 TGGTAGCAGTCCGCTGGCGGTGCCGTTCGT-----AGATTTTATTTTGCTGTTGCGGCCG 157633 |||| ||| || ||| |||||| ||||| ||| | ||| || |||| Sbjct 3421640 GGGTACCAGGCCATTGGAGGTGCCATTCGTGCCGCAGA--TGGAGGTGCCCTT--GGCC- 3421694 Query 157634 CGTACGCTGTTCACGTTCAATCCAATACCGCC-GCCGTGTTTAGAGATCATGGCGCA 157689 || | || | || |||| |||||| || || |||| ||| |||||||||||||| Sbjct 3421695 CGGATGCAATGGACATTCAGTCCAATGCCTCCTGCCG-ATTTCGAGATCATGGCGCA 3421750 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || ||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 3523122 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 3523063 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || ||| | | ||| | || |||| ||||| || |||| ||| | Sbjct 3523062 TCCTGAATCTTGGCTTTAACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATG 3523003 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| || | || || ||||| || ||||| Sbjct 3523002 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 3522968 Score = 86.0 bits (94), Expect = 6e-12 Identities = 111/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 156175 TGTGCGAAAATAGTACATGCCGGTTTTGAGGCCGCGCTTCCAACCGTACATGTGCACCGA 156234 |||||| | ||||||||||||||| |||||||| ||||| ||| | ||| | || Sbjct 3420239 TGTGCGCAGATAGTACATGCCGGTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGA 3420298 Query 156235 CGCCATTTTAGGCAAAG-TAGGGTTTGCCATGTACACGTTGAACGATTGACTTTGATCGA 156293 || || ||| | | || | || | ||||| | | ||||||||| |||||||| |||| Sbjct 3420299 CGTCAGTTT-GCCGTAGTTCGGCTCTGCCACATGAATGTTGAACGACTGACTTTGGTCGA 3420357 Query 156294 TAAATGCTCCCCTGTCTGCTGCCATTTCAAT 156324 | || || || | ||||| ||||||| ||| Sbjct 3420358 TGAACGCACCACGATCTGCGGCCATTTTAAT 3420388 >seq5277 Length=7425378 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||| || |||| || |||||||| || |||||||||||| Sbjct 1193011 GCCACCACGGAGACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGA 1192952 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | ||||| || || || || ||| ||||||| || |||||||| || || Sbjct 1192951 AAGAGTACGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGG 1192892 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| ||| || || | | || | ||| || | || || || Sbjct 1192891 AATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGAC 1192832 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| ||||| || || || || || ||||| Sbjct 1192831 CTCCAAAGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1192784 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | |||||| || || || | || || || || || ||||||||||| Sbjct 1193239 GCCACCACGAAGACGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGA 1193180 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || || | || || ||||| ||||||||| | || ||||| |||||||| || || Sbjct 1193179 CAACGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGG 1193120 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || || | | || | || || | ||||| || Sbjct 1193119 GATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAAC 1193060 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| |||| || || ||||| || ||||| Sbjct 1193059 CTCCAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 1193012 >seq4172 Length=1033301 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||||| ||| ||||| | || || || ||||| |||||||| ||| Sbjct 906967 GCCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGA 907026 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || |||| || | || || || || || || || | |||| ||| |||||||| || | Sbjct 907027 CAGAGTGCGTCCA-TCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGG 907085 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || || || ||||| || || || | | || | || || | || || | Sbjct 907086 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAA 907145 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | ||| | |||||||||||||| || || ||||| || ||||| Sbjct 907146 CCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506979992735280