Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq5242 315 1e-80
seq4172 201 2e-46
seq5074 192 9e-44
seq5214 190 3e-43
>seq5242
Length=5320397
Score = 315 bits (348), Expect = 1e-80
Identities = 583/851 (69%), Gaps = 36/851 (4%)
Strand=Plus/Minus
Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097
||||| ||||||| || ||||| || || ||||| |||||||||||||||||| ||| |
Sbjct 3388514 AGGCTGAGGCCTCTTTCTGGACCGTAGAGGAGGTGGATCTGTCCAAGGACCTGACCGACT 3388455
Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157
|| | || | | || ||||| | || || |||||| | ||||||||||||
Sbjct 3388454 GGCAC---CGCCTCAAGGACGACGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTTTG 3388398
Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217
||| ||||||||| |||||||| || || ||| || || ||| || ||| || |
Sbjct 3388397 CCGCCTCCGATGGCATCGTCAATGAGAACCTGGTGGAGCGGTTCAGCCAGGAGGTGCAGA 3388338
Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277
| | |||| ||||| ||||| ||||| ||| || ||||||||||||||||| |
Sbjct 3388337 TCACGGAGGCCCGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGA 3388278
Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCCG---CAACGTAAACACATGCTCT 125334
||||| ||||| |||| ||||| || |||||| || || | || || |
Sbjct 3388277 TGTACAGCGTGCTGATCGACACTTACATCCGGGATCCGCACCAGCGGGAGTAC---CTGT 3388221
Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGG 125390
| ||||| ||||| ||| ||||| | || || |||||| | |||| |
Sbjct 3388220 TCAACGCCATCGAGACGATGCCGGC----GGTGAAGCGCAAGGCTGACTGGGCTCTGTCC 3388165
Query 125391 TGGATCGATGACGACAAGTCTTC---GTACGCCGACAGACTGGTGGCATTCGCCGCCGTA 125447
|||||| | |||||| | | || || | | | ||||| ||||||||
Sbjct 3388164 TGGATC---TCCTCCAAGTCGGCCAATTTCGGGGAGCGCATCATCGCATTTGCCGCCGTG 3388108
Query 125448 GAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507
|||||||||||||| || || || || |||| || ||||| ||||||||||| ||
Sbjct 3388107 GAGGGCATCTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTG 3388048
Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567
||||| |||||||| | |||||| | || || || |||||||| | |||||||||
Sbjct 3388047 ATGCCGGGACTGACCTTCTCCAACGAGCTGATCTCCCGCGACGAGGGATTGCACTGTGAC 3387988
Query 125568 TTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA--GATCCAGCGATGAAA 125625
|| ||| | || |||| | | | ||| ||||| || |||| ||
Sbjct 3387987 TTCGCCGTGCTGATGTT---CCAGCACCTG--------GTGCAGCGACCCAGACGCGAGC 3387939
Query 125626 AGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCC 125685
||||| | || | |||||| ||| || || || ||||| || || || |||
Sbjct 3387938 GCATCATCGAGATCATCCGCGATGCGGTGCTCATTGAGCAGGAGTTCCTCACAGACGCCC 3387879
Query 125686 TACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGG 125745
| || || | | | || ||||||||||| | || |||| | ||||||| ||||||||||
Sbjct 3387878 TGCCTGTGAACCTCATCGGCATGAACTGTGACCTGATGTCCCAGTACATTGAGTTTGTGG 3387819
Query 125746 CAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTG 125805
| ||||| | ||| |||||| | ||||||| |||||| ||||||| || ||
Sbjct 3387818 CGGATCGCTTGCTGGTGGAGTTGGGCGTTGGCAAGATCTACAACACCAAGAACCCGTTCA 3387759
Query 125806 ATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCG 125865
| |||||| | || || || || || |||||||| || |||||||||||||| |||
Sbjct 3387758 ACTTCATGGAGATGATCTCGCTGGACGGCAAGACCAATTTCTTCGAGAAGAAGGTGGGCG 3387699
Query 125866 AGTACAAACGC 125876
||||| | |||
Sbjct 3387698 AGTACCAGCGC 3387688
>seq4172
Length=1033301
Score = 201 bits (222), Expect = 2e-46
Identities = 394/576 (68%), Gaps = 26/576 (5%)
Strand=Plus/Plus
Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161
|||||| | ||||| |||||||| || ||||| | || || |||||||| || ||||||
Sbjct 489958 TTGCGGAAGAAGATCACTCCGGCACGCGGACCACGCAGCGTTTTGTGCGTCGTGGTGGTC 490017
Query 127162 ACAATGTCACAATACTCAAAGGG-GCCAGGA--ATGACTTTGCCCGCAATCAAGCCCGCA 127218
|||||||| || || || || | | ||| | | | | || |||| |||||
Sbjct 490018 ACAATGTCGGCGTATTCGAATGGTGACGGGATCAAGCCGGCGGCCACAAT---GCCCGAC 490074
Query 127219 ATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGT 127278
| || || || ||||||||||| ||| ||| | ||||| |||| ||||||||
Sbjct 490075 ACATGGGCCATGTCGGCCATCAGGTAGGCGCCCACATCATCGCATATCTGACGGAATCGG 490134
Query 127279 CTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAAT 127338
||||||| | | | | ||||| | | ||||| || || | | || |||
Sbjct 490135 GCGTAGTCCAGGAGTCTCGAGTAGCACGAGATTCCGGCAATTATGATCTGCGGCCGGAAC 490194
Query 127339 AGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTG 127398
|| || ||| || | ||| | ||||||| || ||| |||| || | |||||||
Sbjct 490195 GTCTTCGCCGCCTCCGCCAACTTGTCGTAGTCGATGATTCCCGTCTCCGGGTTCACCTTG 490254
Query 127399 TACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAAT 127446
||||||||||| ||||| |||| || || || || | || ||| |||
Sbjct 490255 TACGGCATGCTCTCGAAGAAGATCGACGTGGCCGATATCTTCTTGGTGGGCGTGAAGAAG 490314
Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGT--- 127503
||||| |||||||| || || ||||||||||| || ||||| || || | || |||
Sbjct 490315 CCGTGGGTCAGGTGACCACCATCGGGCAGATCCAGACCCATAATCCTGTCATGGGGTCGG 490374
Query 127504 TTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACAC 127563
|||| || || || ||||| ||||||||| ||| || || ||||| || |||
Sbjct 490375 CAAACG---CCCGTATAGACGGCCAAGTTGGCCGGCGATCCGGAATACGGCTGCACATTA 490431
Query 127564 ACTCCCCATTCGGACTCGTTCAAATTGAAC-GCTCTGAGACATCGCTGCTGTGCTAGCAG 127622
|| ||||| | | ||| | || ||||||| |||| | ||| || | ||| || || ||
Sbjct 490432 ACGCCCCACTTGTCCTCCTCCAGATTGAACAGCTC-GCGACCACGTTTCTGGGCGAGAAG 490490
Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTA 127658
|| | || ||||| |||||||| |||||||||||
Sbjct 490491 CTCCACGCAGTCGATGAACTCGTTGCCACCATAGTA 490526
>seq5074
Length=4358836
Score = 192 bits (212), Expect = 9e-44
Identities = 323/461 (70%), Gaps = 10/461 (2%)
Strand=Plus/Minus
Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126
|| |||||||| || |||||||| ||||||||| |||||| || | |||||| |
Sbjct 1652746 GGAGATCTGGGCCCGGTGTACGGCTTCCAGTGGCGGCACTTTGGAGCGGAGTATGGCACC 1652687
Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTC 70184
||||| ||| ||||| | || |||| | ||||| |||| |||| | || |||||
Sbjct 1652686 TGCGATGAC-GACTACACTGGAAAGGGCATCGATCAGTTGC-GACAGGTGATCGACACCA 1652629
Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244
|| || ||||| | || ||| | ||| | |||| |||||||||| | || | |
Sbjct 1652628 TCCGGAATAATCCCTCGGACAGGCGCATCATCATGTCGGCATGGAATCCATCGGACATTC 1652569
Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTA-----CTCGTACGAT-G 70298
||||||| || || ||||||||||| |||| ||||| || | | ||| |
Sbjct 1652568 CGAAAATGGCCCTGCCGCCGTGTCACTGCCTGGCGCAGTTCTATGTCTCCCAGACGCGCG 1652509
Query 70299 GCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTA 70358
|| || | || ||| |||| || ||||| ||||||||||| || || || ||||| |
Sbjct 1652508 GCGAACTCTCCTGCCAGCTGTACCAAAGGAGCGCCGACATGGGTCTGGGCGTGCCCTTCA 1652449
Query 70359 ACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGC 70418
|||| || ||| | || | || |||||||| || || | || || ||||| |
Sbjct 1652448 ACATCGCCTCCTACGCCCTGCTCACCCACATGATCGCCCATGTAACGGGTCTGAAGCCAG 1652389
Query 70419 ACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAA 70478
||| || || |||||||| |||||| | ||||| || | |||||| | ||||| | |
Sbjct 1652388 GCGACTTTGTGCACACCATGGGCGACACGCACGTCTACCTGAATCACGTGGAGCCGCTGA 1652329
Query 70479 AGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTG 70519
||| ||| || || || ||||||||| || |||||||||
Sbjct 1652328 AGGAGCAGCTGGAGCGAACGCCGAGACCATTCCCCAAGCTG 1652288
>seq5214
Length=3698012
Score = 190 bits (210), Expect = 3e-43
Identities = 383/557 (69%), Gaps = 12/557 (2%)
Strand=Plus/Minus
Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CAC 96864
|| || |||| | ||| |||||| || || |||||||| | | ||| |||||| |||
Sbjct 3421669 ACGAATGGCACCTCCAATGGCCTGGTACCCATGCTCAGGGTCTTCAA--CAATGTGGCAC 3421612
Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924
| ||||| ||||| ||| || ||||| || || | ||| | ||| |||| || |
Sbjct 3421611 GTTACGTGGATCAGGGTGGCGGCAAGCGGCCCGGTGCCTTCGCCATTTACCTGGAGCCCT 3421552
Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984
||||| ||||||| || || || | || | || ||| | ||| || ||| |
Sbjct 3421551 GGCACTCGGACGTGTTCGAGTTCCTGGAACTCAAGAAGAACACCGGCAAGGAGGAGAATC 3421492
Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044
| ||| | || | || || || |||||| | || ||| | |||||||| |||||| | |
Sbjct 3421491 GCGCCCGCGATCTCTTCTACGCCCTCTGGATACCCGATCTTTTCATGAAACGCGTCGAGG 3421432
Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104
| || ||||| || ||||| || || | ||||| ||| |||| ||||
Sbjct 3421431 CCAACGGGGACTGGTCGCTGATGTGTCCGCACAAATGCCCCGGCCTGCACGATGTGTGGG 3421372
Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGA--GACG 97162
|||| ||||| || ||||||| |||||||| |||||||| | || ||||
Sbjct 3421371 GCGATGAGTTCGAAAAGCTGTACACGCAATACGAGCAGGAGGGCCG-TGCGAACCGGACG 3421313
Query 97163 AGTCGATGCACGAGAACT-GTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221
||| | |||| || || |||| |||||| | | | ||||| || || || | ||
Sbjct 3421312 -GTCAAGGCAC-AGTCCTTGTGGTTCGCCATCATTGAGTCGCAGGTGGAAACCGGCAATC 3421255
Query 97222 CGTACATTCTCTACAAGGATACCGTGAATC-GCAACAGCAACCAACGCCACTTGGGCACC 97280
||||||| || | ||||||| | ||| | | | || |||||||| | | | ||||||
Sbjct 3421254 CGTACATGCTGTTCAAGGATTC-GTGCAACAGGAAGAGCAACCAGCAGAATGTTGGCACC 3421196
Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340
|||||| || |||| ||||||| ||||| || ||||| || | |||||||||| |||
Sbjct 3421195 ATCAAGTGCAGCAATTTGTGCACCGAAATCGTTGAGTATTCCGCGCCGGACGAGATTGCA 3421136
Query 97341 GTTTGCGTTCTGGCATC 97357
|| ||| ||||||||
Sbjct 3421135 GTGTGCAACCTGGCATC 3421119
Score = 154 bits (170), Expect = 2e-32
Identities = 334/491 (68%), Gaps = 8/491 (2%)
Strand=Plus/Minus
Query 97774 ACGGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGT 97833
||||| | || ||||| ||||||| ||||| ||||||||||| ||||| ||||| |
Sbjct 3420690 ACGGTGTCAGGAACTCCCTGCTGGTTGCACCCATGCCCACGGCATCCACTGCCCAAATAA 3420631
Query 97834 TTGGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGT 97893
| ||||| |||||||| || || | ||| | ||||| ||| | ||| | ||
Sbjct 3420630 TGGGCAACAACGAATCTTTCGAGCCCTACACAACTAACATTTACACCCGGCGCGTTCTGT 3420571
Query 97894 CTGGAGAGTTTCAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACG-GCTCAATCTG 97952
| || || || || || |||| || ||| | | ||||| | || ||| || ||
Sbjct 3420570 CCGGTGAATTCCAGGTGGTCAACCATCATTTGTTGAGGGACTTA-ACCGAGCTGGATTTG 3420512
Query 97953 TGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACC 98012
||| |||| || ||| | |||||| | || || || || || || ||||||
Sbjct 3420511 TGGGACGACGATATGAAGAACCAGATCATTTCCAGCAGGGGTTCAATCCAGAACATTGAG 3420452
Query 98013 ATCAT--CCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGAT-TCCGACCAAG 98069
||| ||| |||| ||| ||| | |||||||| || ||||| || |||| |||
Sbjct 3420451 GCCATTCCCCAGAAG-GTT-CGCGATCTTTACAAGACCGTGTGGGAAATCTCCGTG-AAG 3420395
Query 98070 ACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAAT 98129
| || | ||||| || || | |||| | ||| ||||| ||||| ||||||||
Sbjct 3420394 TCCACAATTAAAATGGCCGCAGATCGTGGTGCGTTCATCGACCAAAGTCAGTCGTTCAAC 3420335
Query 98130 CTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAAC 98189
| | || || ||||| | |||| | |||| || || ||||||||| | |||||
Sbjct 3420334 ATTCATGTGGCAGAGCCGAACTACGGCAAACTGACGTCCATTCACTTTTACTCCTGGAAA 3420275
Query 98190 AAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCA 98249
||||||||||| ||||||||||||||| | |||||| | || | || || || |
Sbjct 3420274 GCTGGCCTCAAGACCGGCATGTACTATCTGCGCACAAAGCCAGCTGCGAACGCGATTCAG 3420215
Query 98250 TTTACGGTGGA 98260
|| || |||||
Sbjct 3420214 TTCACCGTGGA 3420204
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741008909870040
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