Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5242 315 1e-80 seq4172 201 2e-46 seq5074 192 9e-44 seq5214 190 3e-43 >seq5242 Length=5320397 Score = 315 bits (348), Expect = 1e-80 Identities = 583/851 (69%), Gaps = 36/851 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 ||||| ||||||| || ||||| || || ||||| |||||||||||||||||| ||| | Sbjct 3388514 AGGCTGAGGCCTCTTTCTGGACCGTAGAGGAGGTGGATCTGTCCAAGGACCTGACCGACT 3388455 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 || | || | | || ||||| | || || |||||| | |||||||||||| Sbjct 3388454 GGCAC---CGCCTCAAGGACGACGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTTTG 3388398 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 ||| ||||||||| |||||||| || || ||| || || ||| || ||| || | Sbjct 3388397 CCGCCTCCGATGGCATCGTCAATGAGAACCTGGTGGAGCGGTTCAGCCAGGAGGTGCAGA 3388338 Query 125218 TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAA 125277 | | |||| ||||| ||||| ||||| ||| || ||||||||||||||||| | Sbjct 3388337 TCACGGAGGCCCGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGA 3388278 Query 125278 TGTACTCTACACTGATTGACATGTACATTCGCGATCCG---CAACGTAAACACATGCTCT 125334 ||||| ||||| |||| ||||| || |||||| || || | || || | Sbjct 3388277 TGTACAGCGTGCTGATCGACACTTACATCCGGGATCCGCACCAGCGGGAGTAC---CTGT 3388221 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCGG 125390 | ||||| ||||| ||| ||||| | || || |||||| | |||| | Sbjct 3388220 TCAACGCCATCGAGACGATGCCGGC----GGTGAAGCGCAAGGCTGACTGGGCTCTGTCC 3388165 Query 125391 TGGATCGATGACGACAAGTCTTC---GTACGCCGACAGACTGGTGGCATTCGCCGCCGTA 125447 |||||| | |||||| | | || || | | | ||||| |||||||| Sbjct 3388164 TGGATC---TCCTCCAAGTCGGCCAATTTCGGGGAGCGCATCATCGCATTTGCCGCCGTG 3388108 Query 125448 GAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507 |||||||||||||| || || || || |||| || ||||| ||||||||||| || Sbjct 3388107 GAGGGCATCTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTG 3388048 Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567 ||||| |||||||| | |||||| | || || || |||||||| | ||||||||| Sbjct 3388047 ATGCCGGGACTGACCTTCTCCAACGAGCTGATCTCCCGCGACGAGGGATTGCACTGTGAC 3387988 Query 125568 TTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA--GATCCAGCGATGAAA 125625 || ||| | || |||| | | | ||| ||||| || |||| || Sbjct 3387987 TTCGCCGTGCTGATGTT---CCAGCACCTG--------GTGCAGCGACCCAGACGCGAGC 3387939 Query 125626 AGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCC 125685 ||||| | || | |||||| ||| || || || ||||| || || || ||| Sbjct 3387938 GCATCATCGAGATCATCCGCGATGCGGTGCTCATTGAGCAGGAGTTCCTCACAGACGCCC 3387879 Query 125686 TACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGG 125745 | || || | | | || ||||||||||| | || |||| | ||||||| |||||||||| Sbjct 3387878 TGCCTGTGAACCTCATCGGCATGAACTGTGACCTGATGTCCCAGTACATTGAGTTTGTGG 3387819 Query 125746 CAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTG 125805 | ||||| | ||| |||||| | ||||||| |||||| ||||||| || || Sbjct 3387818 CGGATCGCTTGCTGGTGGAGTTGGGCGTTGGCAAGATCTACAACACCAAGAACCCGTTCA 3387759 Query 125806 ATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCG 125865 | |||||| | || || || || || |||||||| || |||||||||||||| ||| Sbjct 3387758 ACTTCATGGAGATGATCTCGCTGGACGGCAAGACCAATTTCTTCGAGAAGAAGGTGGGCG 3387699 Query 125866 AGTACAAACGC 125876 ||||| | ||| Sbjct 3387698 AGTACCAGCGC 3387688 >seq4172 Length=1033301 Score = 201 bits (222), Expect = 2e-46 Identities = 394/576 (68%), Gaps = 26/576 (5%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||| |||||||| || ||||| | || || |||||||| || |||||| Sbjct 489958 TTGCGGAAGAAGATCACTCCGGCACGCGGACCACGCAGCGTTTTGTGCGTCGTGGTGGTC 490017 Query 127162 ACAATGTCACAATACTCAAAGGG-GCCAGGA--ATGACTTTGCCCGCAATCAAGCCCGCA 127218 |||||||| || || || || | | ||| | | | | || |||| ||||| Sbjct 490018 ACAATGTCGGCGTATTCGAATGGTGACGGGATCAAGCCGGCGGCCACAAT---GCCCGAC 490074 Query 127219 ATGTGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGT 127278 | || || || ||||||||||| ||| ||| | ||||| |||| |||||||| Sbjct 490075 ACATGGGCCATGTCGGCCATCAGGTAGGCGCCCACATCATCGCATATCTGACGGAATCGG 490134 Query 127279 CTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAAT 127338 ||||||| | | | | ||||| | | ||||| || || | | || ||| Sbjct 490135 GCGTAGTCCAGGAGTCTCGAGTAGCACGAGATTCCGGCAATTATGATCTGCGGCCGGAAC 490194 Query 127339 AGATTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTG 127398 || || ||| || | ||| | ||||||| || ||| |||| || | ||||||| Sbjct 490195 GTCTTCGCCGCCTCCGCCAACTTGTCGTAGTCGATGATTCCCGTCTCCGGGTTCACCTTG 490254 Query 127399 TACGGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAAT 127446 ||||||||||| ||||| |||| || || || || | || ||| ||| Sbjct 490255 TACGGCATGCTCTCGAAGAAGATCGACGTGGCCGATATCTTCTTGGTGGGCGTGAAGAAG 490314 Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGT--- 127503 ||||| |||||||| || || ||||||||||| || ||||| || || | || ||| Sbjct 490315 CCGTGGGTCAGGTGACCACCATCGGGCAGATCCAGACCCATAATCCTGTCATGGGGTCGG 490374 Query 127504 TTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACAC 127563 |||| || || || ||||| ||||||||| ||| || || ||||| || ||| Sbjct 490375 CAAACG---CCCGTATAGACGGCCAAGTTGGCCGGCGATCCGGAATACGGCTGCACATTA 490431 Query 127564 ACTCCCCATTCGGACTCGTTCAAATTGAAC-GCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 || ||||| | | ||| | || ||||||| |||| | ||| || | ||| || || || Sbjct 490432 ACGCCCCACTTGTCCTCCTCCAGATTGAACAGCTC-GCGACCACGTTTCTGGGCGAGAAG 490490 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTA 127658 || | || ||||| |||||||| ||||||||||| Sbjct 490491 CTCCACGCAGTCGATGAACTCGTTGCCACCATAGTA 490526 >seq5074 Length=4358836 Score = 192 bits (212), Expect = 9e-44 Identities = 323/461 (70%), Gaps = 10/461 (2%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 || |||||||| || |||||||| ||||||||| |||||| || | |||||| | Sbjct 1652746 GGAGATCTGGGCCCGGTGTACGGCTTCCAGTGGCGGCACTTTGGAGCGGAGTATGGCACC 1652687 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTC 70184 ||||| ||| ||||| | || |||| | ||||| |||| |||| | || ||||| Sbjct 1652686 TGCGATGAC-GACTACACTGGAAAGGGCATCGATCAGTTGC-GACAGGTGATCGACACCA 1652629 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 || || ||||| | || ||| | ||| | |||| |||||||||| | || | | Sbjct 1652628 TCCGGAATAATCCCTCGGACAGGCGCATCATCATGTCGGCATGGAATCCATCGGACATTC 1652569 Query 70245 ACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTA-----CTCGTACGAT-G 70298 ||||||| || || ||||||||||| |||| ||||| || | | ||| | Sbjct 1652568 CGAAAATGGCCCTGCCGCCGTGTCACTGCCTGGCGCAGTTCTATGTCTCCCAGACGCGCG 1652509 Query 70299 GCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTA 70358 || || | || ||| |||| || ||||| ||||||||||| || || || ||||| | Sbjct 1652508 GCGAACTCTCCTGCCAGCTGTACCAAAGGAGCGCCGACATGGGTCTGGGCGTGCCCTTCA 1652449 Query 70359 ACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGC 70418 |||| || ||| | || | || |||||||| || || | || || ||||| | Sbjct 1652448 ACATCGCCTCCTACGCCCTGCTCACCCACATGATCGCCCATGTAACGGGTCTGAAGCCAG 1652389 Query 70419 ACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAA 70478 ||| || || |||||||| |||||| | ||||| || | |||||| | ||||| | | Sbjct 1652388 GCGACTTTGTGCACACCATGGGCGACACGCACGTCTACCTGAATCACGTGGAGCCGCTGA 1652329 Query 70479 AGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTG 70519 ||| ||| || || || ||||||||| || ||||||||| Sbjct 1652328 AGGAGCAGCTGGAGCGAACGCCGAGACCATTCCCCAAGCTG 1652288 >seq5214 Length=3698012 Score = 190 bits (210), Expect = 3e-43 Identities = 383/557 (69%), Gaps = 12/557 (2%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CAC 96864 || || |||| | ||| |||||| || || |||||||| | | ||| |||||| ||| Sbjct 3421669 ACGAATGGCACCTCCAATGGCCTGGTACCCATGCTCAGGGTCTTCAA--CAATGTGGCAC 3421612 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | ||||| ||||| ||| || ||||| || || | ||| | ||| |||| || | Sbjct 3421611 GTTACGTGGATCAGGGTGGCGGCAAGCGGCCCGGTGCCTTCGCCATTTACCTGGAGCCCT 3421552 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||| ||||||| || || || | || | || ||| | ||| || ||| | Sbjct 3421551 GGCACTCGGACGTGTTCGAGTTCCTGGAACTCAAGAAGAACACCGGCAAGGAGGAGAATC 3421492 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | ||| | || | || || || |||||| | || ||| | |||||||| |||||| | | Sbjct 3421491 GCGCCCGCGATCTCTTCTACGCCCTCTGGATACCCGATCTTTTCATGAAACGCGTCGAGG 3421432 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 | || ||||| || ||||| || || | ||||| ||| |||| |||| Sbjct 3421431 CCAACGGGGACTGGTCGCTGATGTGTCCGCACAAATGCCCCGGCCTGCACGATGTGTGGG 3421372 Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGA--GACG 97162 |||| ||||| || ||||||| |||||||| |||||||| | || |||| Sbjct 3421371 GCGATGAGTTCGAAAAGCTGTACACGCAATACGAGCAGGAGGGCCG-TGCGAACCGGACG 3421313 Query 97163 AGTCGATGCACGAGAACT-GTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTC 97221 ||| | |||| || || |||| |||||| | | | ||||| || || || | || Sbjct 3421312 -GTCAAGGCAC-AGTCCTTGTGGTTCGCCATCATTGAGTCGCAGGTGGAAACCGGCAATC 3421255 Query 97222 CGTACATTCTCTACAAGGATACCGTGAATC-GCAACAGCAACCAACGCCACTTGGGCACC 97280 ||||||| || | ||||||| | ||| | | | || |||||||| | | | |||||| Sbjct 3421254 CGTACATGCTGTTCAAGGATTC-GTGCAACAGGAAGAGCAACCAGCAGAATGTTGGCACC 3421196 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340 |||||| || |||| ||||||| ||||| || ||||| || | |||||||||| ||| Sbjct 3421195 ATCAAGTGCAGCAATTTGTGCACCGAAATCGTTGAGTATTCCGCGCCGGACGAGATTGCA 3421136 Query 97341 GTTTGCGTTCTGGCATC 97357 || ||| |||||||| Sbjct 3421135 GTGTGCAACCTGGCATC 3421119 Score = 154 bits (170), Expect = 2e-32 Identities = 334/491 (68%), Gaps = 8/491 (2%) Strand=Plus/Minus Query 97774 ACGGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGT 97833 ||||| | || ||||| ||||||| ||||| ||||||||||| ||||| ||||| | Sbjct 3420690 ACGGTGTCAGGAACTCCCTGCTGGTTGCACCCATGCCCACGGCATCCACTGCCCAAATAA 3420631 Query 97834 TTGGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTACCAGAGACGCACCCAGT 97893 | ||||| |||||||| || || | ||| | ||||| ||| | ||| | || Sbjct 3420630 TGGGCAACAACGAATCTTTCGAGCCCTACACAACTAACATTTACACCCGGCGCGTTCTGT 3420571 Query 97894 CTGGAGAGTTTCAATTGACCAACGTGCACTTGGTTCGAGACTTGGAACG-GCTCAATCTG 97952 | || || || || || |||| || ||| | | ||||| | || ||| || || Sbjct 3420570 CCGGTGAATTCCAGGTGGTCAACCATCATTTGTTGAGGGACTTA-ACCGAGCTGGATTTG 3420512 Query 97953 TGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGGTCCATTCAAAACATTACC 98012 ||| |||| || ||| | |||||| | || || || || || || |||||| Sbjct 3420511 TGGGACGACGATATGAAGAACCAGATCATTTCCAGCAGGGGTTCAATCCAGAACATTGAG 3420452 Query 98013 ATCAT--CCCGGAAGAGTTGCGCAGAATCTACAAGACTGTCTGGGAGAT-TCCGACCAAG 98069 ||| ||| |||| ||| ||| | |||||||| || ||||| || |||| ||| Sbjct 3420451 GCCATTCCCCAGAAG-GTT-CGCGATCTTTACAAGACCGTGTGGGAAATCTCCGTG-AAG 3420395 Query 98070 ACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACCAGAGTCAATCGTTCAAT 98129 | || | ||||| || || | |||| | ||| ||||| ||||| |||||||| Sbjct 3420394 TCCACAATTAAAATGGCCGCAGATCGTGGTGCGTTCATCGACCAAAGTCAGTCGTTCAAC 3420335 Query 98130 CTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATACACTTTTACGCATGGAAC 98189 | | || || ||||| | |||| | |||| || || ||||||||| | ||||| Sbjct 3420334 ATTCATGTGGCAGAGCCGAACTACGGCAAACTGACGTCCATTCACTTTTACTCCTGGAAA 3420275 Query 98190 AAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGGCCACCAATGCCATACCA 98249 ||||||||||| ||||||||||||||| | |||||| | || | || || || | Sbjct 3420274 GCTGGCCTCAAGACCGGCATGTACTATCTGCGCACAAAGCCAGCTGCGAACGCGATTCAG 3420215 Query 98250 TTTACGGTGGA 98260 || || ||||| Sbjct 3420214 TTCACCGTGGA 3420204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741008909870040