Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_004305.1 Length=42259 Score E Sequences producing significant alignments: (Bits) Value seq1986 345 1e-90 seq1989 226 8e-55 seq1958 188 2e-43 >seq1986 Length=1413 Score = 345 bits (382), Expect = 1e-90 Identities = 304/379 (80%), Gaps = 0/379 (0%) Strand=Plus/Minus Query 7188 GCCAGGATAAATCGTACTATAGATTGATTTGCCGTTCTGACTCGCCAGCGTATACATGCT 7247 ||| ||||| || || | || |||| |||||||||||||| || | ||| ||| | Sbjct 808 GCCGGGATAGATAGTGGTGTAAATTGTCTTGCCGTTCTGACTAGCTAATGTAGTCATATT 749 Query 7248 TAATCCGTTCCGTTGGGCAATCTTCCACCATGAGTCGCCTGAAACGACCGTGTAATACGC 7307 || ||||| ||||| || || |||||| |||||| || ||| |||||||||| Sbjct 748 TAGGCCGTTGCGTTGTGCGATTGCCCACCAGCTGTCGCCAGACTTGACTGTGTAATACGT 689 Query 7308 GTGAGAAGCACTAGTTTCGACGTATTCCAGCGTATTGCTTGATGGGCCGGTTGCTAGATA 7367 ||||| |||| | | | || |||||||||||||||||||| ||||||||||||||||| Sbjct 688 GTGAGTTGCACCACTCTTTACATATTCCAGCGTATTGCTTGACGGGCCGGTTGCTAGATA 629 Query 7368 GCCGTGTCCATTAAATCGTGGCTGGCGTACCCACCGATAGCCACCTTGAATGATAGCTTG 7427 || | ||||||||||||||||| |||||||| ||||||||||||||||||||||| || Sbjct 628 ACCATAACCATTAAATCGTGGCTGACGTACCCAGCGATAGCCACCTTGAATGATAGCATG 569 Query 7428 ATCAGTTTTGACCGTAGTTCCAGCAGGTAAAGTCGTGATCACGTTTGATGACGTTGATGC 7487 || || || ||||| |||||||| || ||| | |||||||| |||||||||||||| || Sbjct 568 GTCGGTCTTTACCGTGGTTCCAGCTGGCAAAATAGTGATCACATTTGATGACGTTGACGC 509 Query 7488 GCCTGTGCGCAGCTTGACCGCAGTCTTGAGCGTGTAAGTCTTCGACTCCTTAACCCACTT 7547 ||||| ||||||||| |||||||||||||| |||||||| || | ||||||| |||||| Sbjct 508 GCCTGCGCGCAGCTTAACCGCAGTCTTGAGTGTGTAAGTTTTAGCTTCCTTAATCCACTT 449 Query 7548 GGCTGAATTAGATGGCTTG 7566 || ||| |||| |||| Sbjct 448 GGATGACGCAGATTTCTTG 430 >seq1989 Length=1118 Score = 226 bits (250), Expect = 8e-55 Identities = 154/171 (90%), Gaps = 3/171 (2%) Strand=Plus/Plus Query 30439 TTTTTATCCAAACTAAAAGCGCCATGCTTATTTGCACGACGCTTCTTGTCCTTGTACCAC 30498 || || |||||||||||||||||||||||||| ||||||| |||||| ||||| ||||| Sbjct 552 TTATTTTCCAAACTAAAAGCGCCATGCTTATTCGCACGACACTTCTTATCCTTATACCAT 611 Query 30499 TTATCTAGCCGAGCATCAGCCTGCACCCATTCAGGCGGCTCGTACCCGTATTTGCTATGA 30558 |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 612 CTATCTAGCCGAGCATCAGCCTGCACCCATTCAGGCGGCTCGTACCCATATTTGCTGTGA 671 Query 30559 ATCATCACTGCCATGACCACCATTTCCCTAATTTTATGTAAAATAAAAACG 30609 ||||| |||||||||| ||||| | ||||| |||| |||||||||||||| Sbjct 672 ATCATTACTGCCATGA-CACCACT--CCTAAATTTACGTAAAATAAAAACG 719 Score = 150 bits (166), Expect = 5e-32 Identities = 103/116 (89%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 29640 TCCATGCCTCCCACATCATCAACTATCAGTGTCTGTCCCTCATTACTTTCACCACTCCGT 29699 || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 3 TCTATGCCTCCCACATCATCAACTATCAGTGTCTGTCCCTCATTGCTTTCACCACTCCGG 62 Query 29700 ACCTCTTTAGCCTTAGACTCAGCAATATCCGCGTCAGCTTTAAGCTTGCGAATCTG 29755 |||||||||| ||||||||||||||||| || ||||| | | || |||||||| Sbjct 63 GCCTCTTTAGCTTTAGACTCAGCAATATCTGCTTCAGCCTCAGCTTTACGAATCTG 118 Score = 96.9 bits (106), Expect = 9e-16 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 30131 TTTCATTACATACCACCACACCTCCGTTTTTAAACCCGTCGATTTCGACTGGTTTAGAAT 30190 |||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| Sbjct 432 TTTCATTACATACCACCACACCTCCGTTTTTAAACCAGTCGAAATCGACGGGTTTAGAAT 491 Query 30191 TAGTTACTATTTGCCA 30206 || | ||||| ||| Sbjct 492 TAATCTTTATTTTCCA 507 >seq1958 Length=1969 Score = 188 bits (208), Expect = 2e-43 Identities = 184/236 (78%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 7168 TATTTGATAATCAACTTGTTGCCAGGATAAATCGTACTATAGATTGATTTGCCGTTCTGA 7227 ||||| |||||||| || |||| ||||||||||| |||||| || ||||| || Sbjct 1828 TATTTAATAATCAATTTTATGCCCGGATAAATCGTTGAATAGATACTCTTACCGTTTTGT 1769 Query 7228 CTCGCCAGCGTATACATGCTTAATCCGTTCCGTTGGGCAATCTTCCACCATGAGTCGCCT 7287 || | |||||||||||| | ||||| |||| ||||||| |||||| || ||| Sbjct 1768 GATGCTAACGTATACATGCTCAGGCCGTTTCGTTTGGCAATCGACCACCAACTATCACCT 1709 Query 7288 GAAACGACCGTGTAATACGCGTGAGAAGCACTAGTTTCGACGTATTCCAGCGTATTGCTT 7347 ||||||||||||||||||| |||||||||| |||| ||||||||||| | ||| | Sbjct 1708 GAAACGACCGTGTAATACGTGTGAGAAGCATCCGTTTTAACGTATTCCAGTGAATTATTG 1649 Query 7348 GATGGGCCGGTTGCTAGATAGCCGT-GTCCATTAAATCGTGGCTGGCGTACCCACC 7402 | |||||| ||||||||| | || | ||||||||||||||||| |||||||||| Sbjct 1648 GCTGGGCCTGTTGCTAGACAACCATAACCCATTAAATCGTGGCTGACGTACCCACC 1593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135098489723258