Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_004305.1
Length=42259
Score E
Sequences producing significant alignments: (Bits) Value
seq1986 345 1e-90
seq1989 226 8e-55
seq1958 188 2e-43
>seq1986
Length=1413
Score = 345 bits (382), Expect = 1e-90
Identities = 304/379 (80%), Gaps = 0/379 (0%)
Strand=Plus/Minus
Query 7188 GCCAGGATAAATCGTACTATAGATTGATTTGCCGTTCTGACTCGCCAGCGTATACATGCT 7247
||| ||||| || || | || |||| |||||||||||||| || | ||| ||| |
Sbjct 808 GCCGGGATAGATAGTGGTGTAAATTGTCTTGCCGTTCTGACTAGCTAATGTAGTCATATT 749
Query 7248 TAATCCGTTCCGTTGGGCAATCTTCCACCATGAGTCGCCTGAAACGACCGTGTAATACGC 7307
|| ||||| ||||| || || |||||| |||||| || ||| ||||||||||
Sbjct 748 TAGGCCGTTGCGTTGTGCGATTGCCCACCAGCTGTCGCCAGACTTGACTGTGTAATACGT 689
Query 7308 GTGAGAAGCACTAGTTTCGACGTATTCCAGCGTATTGCTTGATGGGCCGGTTGCTAGATA 7367
||||| |||| | | | || |||||||||||||||||||| |||||||||||||||||
Sbjct 688 GTGAGTTGCACCACTCTTTACATATTCCAGCGTATTGCTTGACGGGCCGGTTGCTAGATA 629
Query 7368 GCCGTGTCCATTAAATCGTGGCTGGCGTACCCACCGATAGCCACCTTGAATGATAGCTTG 7427
|| | ||||||||||||||||| |||||||| ||||||||||||||||||||||| ||
Sbjct 628 ACCATAACCATTAAATCGTGGCTGACGTACCCAGCGATAGCCACCTTGAATGATAGCATG 569
Query 7428 ATCAGTTTTGACCGTAGTTCCAGCAGGTAAAGTCGTGATCACGTTTGATGACGTTGATGC 7487
|| || || ||||| |||||||| || ||| | |||||||| |||||||||||||| ||
Sbjct 568 GTCGGTCTTTACCGTGGTTCCAGCTGGCAAAATAGTGATCACATTTGATGACGTTGACGC 509
Query 7488 GCCTGTGCGCAGCTTGACCGCAGTCTTGAGCGTGTAAGTCTTCGACTCCTTAACCCACTT 7547
||||| ||||||||| |||||||||||||| |||||||| || | ||||||| ||||||
Sbjct 508 GCCTGCGCGCAGCTTAACCGCAGTCTTGAGTGTGTAAGTTTTAGCTTCCTTAATCCACTT 449
Query 7548 GGCTGAATTAGATGGCTTG 7566
|| ||| |||| ||||
Sbjct 448 GGATGACGCAGATTTCTTG 430
>seq1989
Length=1118
Score = 226 bits (250), Expect = 8e-55
Identities = 154/171 (90%), Gaps = 3/171 (2%)
Strand=Plus/Plus
Query 30439 TTTTTATCCAAACTAAAAGCGCCATGCTTATTTGCACGACGCTTCTTGTCCTTGTACCAC 30498
|| || |||||||||||||||||||||||||| ||||||| |||||| ||||| |||||
Sbjct 552 TTATTTTCCAAACTAAAAGCGCCATGCTTATTCGCACGACACTTCTTATCCTTATACCAT 611
Query 30499 TTATCTAGCCGAGCATCAGCCTGCACCCATTCAGGCGGCTCGTACCCGTATTTGCTATGA 30558
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 612 CTATCTAGCCGAGCATCAGCCTGCACCCATTCAGGCGGCTCGTACCCATATTTGCTGTGA 671
Query 30559 ATCATCACTGCCATGACCACCATTTCCCTAATTTTATGTAAAATAAAAACG 30609
||||| |||||||||| ||||| | ||||| |||| ||||||||||||||
Sbjct 672 ATCATTACTGCCATGA-CACCACT--CCTAAATTTACGTAAAATAAAAACG 719
Score = 150 bits (166), Expect = 5e-32
Identities = 103/116 (89%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 29640 TCCATGCCTCCCACATCATCAACTATCAGTGTCTGTCCCTCATTACTTTCACCACTCCGT 29699
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 3 TCTATGCCTCCCACATCATCAACTATCAGTGTCTGTCCCTCATTGCTTTCACCACTCCGG 62
Query 29700 ACCTCTTTAGCCTTAGACTCAGCAATATCCGCGTCAGCTTTAAGCTTGCGAATCTG 29755
|||||||||| ||||||||||||||||| || ||||| | | || ||||||||
Sbjct 63 GCCTCTTTAGCTTTAGACTCAGCAATATCTGCTTCAGCCTCAGCTTTACGAATCTG 118
Score = 96.9 bits (106), Expect = 9e-16
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 30131 TTTCATTACATACCACCACACCTCCGTTTTTAAACCCGTCGATTTCGACTGGTTTAGAAT 30190
|||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||
Sbjct 432 TTTCATTACATACCACCACACCTCCGTTTTTAAACCAGTCGAAATCGACGGGTTTAGAAT 491
Query 30191 TAGTTACTATTTGCCA 30206
|| | ||||| |||
Sbjct 492 TAATCTTTATTTTCCA 507
>seq1958
Length=1969
Score = 188 bits (208), Expect = 2e-43
Identities = 184/236 (78%), Gaps = 1/236 (0%)
Strand=Plus/Minus
Query 7168 TATTTGATAATCAACTTGTTGCCAGGATAAATCGTACTATAGATTGATTTGCCGTTCTGA 7227
||||| |||||||| || |||| ||||||||||| |||||| || ||||| ||
Sbjct 1828 TATTTAATAATCAATTTTATGCCCGGATAAATCGTTGAATAGATACTCTTACCGTTTTGT 1769
Query 7228 CTCGCCAGCGTATACATGCTTAATCCGTTCCGTTGGGCAATCTTCCACCATGAGTCGCCT 7287
|| | |||||||||||| | ||||| |||| ||||||| |||||| || |||
Sbjct 1768 GATGCTAACGTATACATGCTCAGGCCGTTTCGTTTGGCAATCGACCACCAACTATCACCT 1709
Query 7288 GAAACGACCGTGTAATACGCGTGAGAAGCACTAGTTTCGACGTATTCCAGCGTATTGCTT 7347
||||||||||||||||||| |||||||||| |||| ||||||||||| | ||| |
Sbjct 1708 GAAACGACCGTGTAATACGTGTGAGAAGCATCCGTTTTAACGTATTCCAGTGAATTATTG 1649
Query 7348 GATGGGCCGGTTGCTAGATAGCCGT-GTCCATTAAATCGTGGCTGGCGTACCCACC 7402
| |||||| ||||||||| | || | ||||||||||||||||| ||||||||||
Sbjct 1648 GCTGGGCCTGTTGCTAGACAACCATAACCCATTAAATCGTGGCTGACGTACCCACC 1593
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 135098489723258
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |