Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq5277 104 2e-17 seq4172 98.7 7e-16 >seq5277 Length=7425378 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||| || | | ||| || |||||||| || || || || |||||||| ||| Sbjct 1193466 CCACCTCGCAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 1193407 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | | | ||||| || ||||| || ||| | || | ||| || || || ||| Sbjct 1193406 AGAGTGCGACCATCTTCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGGA 1193347 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || ||||| |||||| ||| || | || |||||||| | ||| || Sbjct 1193346 ATTCCCTCCTTGTCCTGAATTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACC 1193287 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||||||||| || || || ||||| || |||||||| Sbjct 1193286 TCCAGAGTGATGGTTTTACCGGTAAGGGTCTTTACGAAGATTTGCAT 1193240 Score = 98.7 bits (108), Expect = 7e-16 Identities = 152/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || ||||||||||| ||||| || |||||||||||| ||| | | | ||||| Sbjct 1192993 AACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCCATCTTC 1192934 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || ||||| || | |||| || || || || ||||| || || ||||| Sbjct 1192933 AAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTG 1192874 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| ||| ||| | || || |||||| | || || || || |||||||| || Sbjct 1192873 AATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAGTAATGGTCTT 1192814 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15369 || |||| || || ||||| || ||||| ||||| Sbjct 1192813 GCCAGTCAAGGTCTTCACAAAGATCTGCAT-TTTGA 1192779 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || || || |||||||||||| ||| | | |||| || Sbjct 1194360 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCCTCC 1194301 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || ||||| || | |||||||| || ||||| |||||||| || ||||| Sbjct 1194300 AACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCCTGG 1194241 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| | || ||||| || || || || | |||||||| || Sbjct 1194240 ATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCACCTCCAGTGTAATGGTCTTG 1194181 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || || |||||||| Sbjct 1194180 CCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152 >seq4172 Length=1033301 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || |||||||| || || || || ||||| |||||| | | | | |||| || Sbjct 907442 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGACAAAGTACGTCCGTCCTCC 907501 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || || ||| | |||||||| || || || |||||||| || ||||| Sbjct 907502 AGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 907561 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||| ||| | || ||||||||| | || || || || || ||||| || Sbjct 907562 ATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTG 907621 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 || |||| ||| || || |||||||||||||| Sbjct 907622 CCAGTCAAAGTCTTCACGAAAATTTGCATATT 907653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362155236073689