Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq4594 91.5 1e-13 seq5277 84.2 2e-11 >seq4594 Length=2557182 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 21141 GTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTGCGT 21200 ||||||||||||||| | ||| || || || || |||| ||||| || | | | ||| Sbjct 2006563 GTTGCCCAGATCGCCCAGGTGGCGGTCCTCGTCGGCGGGGGCGCCATGCTCCTTGC-CGT 2006621 Query 21201 AGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAACTCGTGAA 21259 |||| || || ||| || | ||| ||||||||||| || |||| ||||||||||| | Sbjct 2006622 AGGGATTGAAATGCGGCCCCGATGACATGCAGCCGTTGGTGTTGTCCCCGAACTCGTGCA 2006681 Query 21260 CGTGAAAGCCGTGCAGTCC 21278 | || || |||||||| || Sbjct 2006682 CATGGAATCCGTGCAGACC 2006700 >seq5277 Length=7425378 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||||||||| || || ||||| || | | || | |||||| Sbjct 1193904 ACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCC 1193845 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || || ||||| ||| |||| || | ||||||||| ||| | |||||| ||||| | Sbjct 1193844 AGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGA 1193785 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| ||||| | | | ||||| ||||| ||| | ||| ||||| || Sbjct 1193784 ATTTTGGCCTTTACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGGGTGATGGTCTTG 1193725 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || ||||| || || || || || ||||| Sbjct 1193724 CCAGTTAAGGTCTTCACGAAGATCTGCAT 1193696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414545369402026