Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_004914.3 Length=62706 Score E Sequences producing significant alignments: (Bits) Value seq2 152 2e-32 seq30 150 7e-32 seq5077 122 3e-23 >seq2 Length=187580 Score = 152 bits (168), Expect = 2e-32 Identities = 293/428 (68%), Gaps = 13/428 (3%) Strand=Plus/Minus Query 56367 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 56426 || |||||||| ||||||| ||||| | |||||||||||||| || || | | |||| Sbjct 810 CGCCGATTGTTGAACCAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTT 751 Query 56427 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 56483 ||||| | || || | || | || | |||||| || || || ||| |||| || Sbjct 750 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAGAGCCCGTTAATGGTCTCCGCG 691 Query 56484 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 56543 | || || ||||| || || || || || ||| || | | || ||||| Sbjct 690 AGGGCATTATCATAGGAATCTCCAACGCTTCCGACTGAGGCAACGAGCCCCGCTTCAGCC 631 Query 56544 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 56601 |||| | ||| ||| | |||||||||||| |||| ||| |||||| | Sbjct 630 AGTCTTTGCGTGTAGCGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTCACT 571 Query 56602 TGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTTT 56661 | || || | | |||| |||||||| || |||||||||||||| |||| | Sbjct 570 TTCCCTCAGGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAA-GTCGGT- 513 Query 56662 CCATAGAC----GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATA 56717 || | | |||||||| ||||| ||||| ||| | |||||||||||||||||| Sbjct 512 --ATGGGCCGTTGATGAGACACGCCAGCCCACAATGACCCGGGCAAACACATCAATGATG 455 Query 56718 AACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAGC 56777 || || ||||| || ||||||||||| ||| || ||||||||||| | ||||| ||| Sbjct 454 AAGGCTACATAAACAAAGCCCTGCCAAGTGGAAACATAAGTAAAATCCGAAACCCAGAGC 395 Query 56778 TGGTCAGG 56785 || ||| Sbjct 394 CTGTTAGG 387 >seq30 Length=443100 Score = 150 bits (166), Expect = 7e-32 Identities = 293/429 (68%), Gaps = 14/429 (3%) Strand=Plus/Plus Query 56367 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 56426 || |||||||| ||||||| ||||| | |||||||||||||| || || | | |||| Sbjct 159934 CGCCGATTGTTGAACCAGTCGACCCATTTAAGTGTGGCCAGTTCAACCGCTTCCCTGTTT 159993 Query 56427 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 56483 ||||| | || || | || | || | |||||| || || || ||| |||| || Sbjct 159994 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAGAGCCCGTTAATGGTCTCCGCG 160053 Query 56484 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 56543 | || || ||||| || || || || || ||| || | | || ||||| Sbjct 160054 AGGGCATTATCATAGGAATCTCCAACGCTTCCGACTGAGGCAACGAGCCCCGCTTCAGCC 160113 Query 56544 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 56601 |||| | ||| ||| | |||||||||||| |||| ||| |||||| | Sbjct 160114 AGTCTTTGCGTGTAGCGAATGGACACATACTGACAGCCGCGATCTGAATGATGGGTCACT 160173 Query 56602 -TGCCAGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTCGTT 56660 | || || | | |||| |||||||| || |||||||||||||| |||| | Sbjct 160174 TTTCCCTCAGGTTGCCTCTGGCACAGAGCCTGCTCAAGGGCATCCAGCACGAA-GTCGGT 160232 Query 56661 TCCATAGAC----GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGAT 56716 || | | |||||||| ||||| ||||| ||| | |||||||||||||||||| Sbjct 160233 ---ATGGGCCGTTGATGAGACACGCCAGCCCACAATGACCCGGGCAAACACATCAATGAT 160289 Query 56717 AAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCCACAG 56776 || || ||||| || ||||||||||| ||| || ||||||||||| | ||||| || Sbjct 160290 GAAGGCTACATAAACAAAGCCCTGCCAAGTGGAAACATAAGTAAAATCCGAAACCCAGAG 160349 Query 56777 CTGGTCAGG 56785 | || ||| Sbjct 160350 CCTGTTAGG 160358 >seq5077 Length=233700 Score = 122 bits (134), Expect = 3e-23 Identities = 287/424 (68%), Gaps = 22/424 (5%) Strand=Plus/Plus Query 56367 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 56426 || ||||| || ||||||| ||||| | ||||| |||||||| || || | | |||| Sbjct 102228 CGCCGATTATTGAACCAGTCGACCCATTTAAGTGTTGCCAGTTCAACAGCTTCCCTGTTT 102287 Query 56427 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 56483 ||||| | || || | || | || | ||||||||| || || ||| |||| ||| Sbjct 102288 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAAAGTCCGTTAATGGTCTCTGCC 102347 Query 56484 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 56543 | ||||| ||||| || || || ||| || || || | | || ||||| Sbjct 102348 AAGGCGTTATCATAGGAATCCCCAACACTGCCGACAGAAGCAACGAGCCCCGCTTCAGCC 102407 Query 56544 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 56601 |||| | ||| ||| | |||||||| ||| |||| ||| || ||| | Sbjct 102408 AGTCTTTGCGTGTAGCGAATGGACACATATTGACAGCCGCGGTCGGAATGGTGGGTCACT 102467 Query 56602 --TGCC--AGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTC 56657 | || || | | | || |||| |||||||| || |||||||| ||||| ||| Sbjct 102468 TTTCCCTCAGGCTGCCTCTGG---CACAGAGCCTGCTCAAGGGCATCCAGTACGAA-GTC 102523 Query 56658 GTTTCCAT-AGACGATGAG---ACCCGCCACCCCACGATGTATCCG-GCAAACACATCAA 56712 | | || || || |||| || ||||| ||||| || | ||| ||||| || |||| Sbjct 102524 GGT---ATGAGCCGTTGAGGAGACACGCCAACCCACAATA-ACCCGTGCAAAGACGTCAA 102579 Query 56713 TGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCACCC 56772 |||| || |||||||| || ||||||||||| ||| || || || ||||| | |||| Sbjct 102580 TGATGAAGGCCACATAAACAAAGCCCTGCCAAGTGGAAACATACGTGAAATCCGAAACCC 102639 Query 56773 ACAG 56776 |||| Sbjct 102640 ACAG 102643 Score = 113 bits (124), Expect = 2e-20 Identities = 286/426 (67%), Gaps = 23/426 (5%) Strand=Plus/Plus Query 56367 CGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAGTTCCACTTCTGCACGGTTT 56426 || ||||| || ||||||| ||||| | ||||| |||||||| || || | | |||| Sbjct 56751 CGCCGATTATTGAACCAGTCGACCCATTTAAGTGTTGCCAGTTCAACAGCTTCCCTGTTT 56810 Query 56427 TTCCAG---CTCTTACGGTGTATTACCTCCGCTTTGTAAAGACCATTGATGCTCTCAGCC 56483 ||||| | || || | || | || | ||||||||| || || ||| |||| ||| Sbjct 56811 TTCCATGGCCCCTGCCGATAGATGAGTTCGGTTTTGTAAAGTCCGTTAATGGTCTCTGCC 56870 Query 56484 ATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATGCCAGTAATCCGGCTTCTTTT 56543 | ||||| ||||| || || || ||| || || || | | || ||||| Sbjct 56871 AAGGCGTTATCATAGGAATCCCCAACACTGCCGACAGAAGCAACGAGCCCCGCTTCAGCC 56930 Query 56544 AGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTTTATCGCTGTGATGGATGG-- 56601 |||| | ||| ||| | |||||||| ||| |||| ||| || ||| | Sbjct 56931 AGTCTTTGCGTGTAGCGAATGGACACATATTGACAGCCGCGGTCGGAATGGTGGGTCACT 56990 Query 56602 --TGCC--AGACGGACGACGGGCCCACAACGCCTGCTCCAGCGCATCCAGCACGAATGTC 56657 | || || | | | || |||| |||||||| || |||||||| ||||| ||| Sbjct 56991 TTTCCCTCAGGCTGCCTCTGG---CACAGAGCCTGCTCAAGGGCATCCAGTACGAA-GTC 57046 Query 56658 GTTTCCAT-AGACGATGAG---ACCCGCCACCCCACGATGTATCCG--GCAAACA-CATC 56710 | | || || || |||| || ||||| ||||| | | ||| ||||| | | || Sbjct 57047 GGT---ATGAGCCGTTGAGGAGACACGCCAACCCACCAATAACCCGTAGCAAAGAACGTC 57103 Query 56711 AATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGACGTAAGTAAAATCAGCCAC 56770 |||||| || |||||||| || ||||||||||| ||| || || || ||||| | || Sbjct 57104 AATGATGAAGGCCACATAAACAAAGCCCTGCCAAGTGGAAACATACGTGAAATCCGAAAC 57163 Query 56771 CCACAG 56776 |||||| Sbjct 57164 CCACAG 57169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200521131453423