Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq5277 107 1e-18 >seq5277 Length=7425378 Score = 107 bits (118), Expect = 1e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| ||||| |||||||| || || || |||||||| ||||| | | Sbjct 1193226 CGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGACAACGTACGGCCA 1193167 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| |||||| ||| ||| || | ||| ||||| || | ||| |||||||| || Sbjct 1193166 TCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTTG 1193107 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| || || |||| ||| |||||||| Sbjct 1193106 TCCTGGATCTTGGCC---TTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTG 1193050 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || ||||| || || || ||||| || |||||| Sbjct 1193049 ATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 1193011 Score = 104 bits (114), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| |||| || |||||||| || || ||||| || ||||| | | Sbjct 1194138 CGCAACACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCA 1194079 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTT 33274 || |||| |||||| ||| || || | ||| ||||| || | ||| ||||| ||||| Sbjct 1194078 TCCTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCTTTG 1194019 Query 33275 TC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || | | ||| || || ||| | ||| ||||||||| Sbjct 1194018 TCCTGGATCTTGGCC---TTCACGTTCTCAATGGTATCAGAGGGCTCAACCTCCAGAGTT 1193962 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || ||||| || || || || || ||||| ||||||||| Sbjct 1193961 ATGGTTTTACCGGTCAGGGTCTTCACGAAGATTTGCATG 1193923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318756507781242