Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq2 107 2e-18 seq4311 82.4 8e-11 >seq2 Length=187580 Score = 107 bits (118), Expect = 2e-18 Identities = 174/248 (70%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 6476 CGGAGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCT 6535 ||||| ||||||||||| || || || | || ||||| || | ||||||||||| Sbjct 91844 CGGAGGGCTTCACCAAACGCCACGGCCTTACCGGCAATAACGTGCATCAGCGGGCCGCCC 91903 Query 6536 TGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTAGTAAGA 6595 || | ||| ||||| | |||||| || | || || || | | | || || || || Sbjct 91904 TGCAAACCGGGGAACACAGCAGAGTTGATCTTTTTAGCCAATGCTTCGTCATTGGTCAGG 91963 Query 6596 ATGAGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCGGCA 6655 || || || ||||| ||||| |||| ||||||||| || || | || |||| | || Sbjct 91964 ATCAGACCGCCACGTGGGCCACGCAGAGTTTTATGCGTGGTGGAGGTTACAA--TATGC- 92020 Query 6656 CCCCATTTGAGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCCATA 6715 | ||| || || || | | || | |||||| || || ||||||||||| |||||| Sbjct 92021 GCGTATTCCAGCGGGTTCGGATACAGGCCAGCAGCCACCAAACCAGCAAAATGCGCCATA 92080 Query 6716 TCGACCAT 6723 || ||||| Sbjct 92081 TCCACCAT 92088 >seq4311 Length=289319 Score = 82.4 bits (90), Expect = 8e-11 Identities = 171/253 (68%), Gaps = 9/253 (4%) Strand=Plus/Plus Query 6476 CGGAGAGCTTCACCAAAACAAACTGCTTTCGCTGCGATAACATGAAGAAGCGGGCCGCCT 6535 || || ||||| ||||| || || || | || || || || | |||||||| || Sbjct 186837 CGCAGGGCTTCCCCAAACGCCACGGCCTTGCCCGCAATCACGTGCATCAGCGGGCCACCC 186896 Query 6536 TGAATACCCGGGAAGATAGCAGAATTTACTTTCTTGGCGATATCAGCATCGTTA---GTA 6592 || | || ||||| | ||||| || | |||||||| | || |||||| || Sbjct 186897 TGCAAGCCAGGGAACACGGCAGAGTTGATCTTCTTGGCCAGC---GCCTCGTTATTGGTC 186953 Query 6593 AGAATGAGGCCACCACGAGGGCCGCGCAAAGTTTTATGAGTTGTAGTAGTAACAACGTCG 6652 || || ||||| ||||| ||||| ||||||||||| || || || | || || || || Sbjct 186954 AGGATCAGGCCGCCACGCGGGCCACGCAAAGTTTTGTGCGTGGTGGATGTCACGACATCC 187013 Query 6653 GCACCCCATTTGAGTGGATTAGCGTGAAGACGAGCAGCAACAAAGCCAGCAAAATGGGCC 6712 ||| | | | || || | | |||| ||||| || | ||||| ||||| ||| Sbjct 187014 GCA---TACTCAATCGGGTTGGGATACAGACCGGCAGCGACCAGACCAGCGAAATGCGCC 187070 Query 6713 ATATCGACCATCA 6725 || || ||||||| Sbjct 187071 ATGTCCACCATCA 187083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555325511664840