Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq5078 86.0 9e-12 seq4086 86.0 9e-12 seq4085 86.0 9e-12 seq4667 84.2 3e-11 seq4241 84.2 3e-11 seq2039 84.2 3e-11 seq30 84.2 3e-11 >seq5078 Length=1488007 Score = 86.0 bits (94), Expect = 9e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 108011 TGGAGCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCA 108070 ||| ||||||| | || ||||||| | ||||||| ||||||||||| |||||||||||| Sbjct 1444826 TGGTGCCCCCAGTAGGATTTGAACCCACGACCTACCGCTTACAAGGCGGTTGCTCTACCA 1444885 Query 108071 CTGAGCTATA 108080 |||||||||| Sbjct 1444886 CTGAGCTATA 1444895 >seq4086 Length=80244 Score = 86.0 bits (94), Expect = 9e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 108011 TGGAGCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCA 108070 ||| ||||||| | || ||||||| | ||||||| ||||||||||| |||||||||||| Sbjct 24745 TGGTGCCCCCAGTAGGATTTGAACCCACGACCTACCGCTTACAAGGCGGTTGCTCTACCA 24804 Query 108071 CTGAGCTATA 108080 |||||||||| Sbjct 24805 CTGAGCTATA 24814 >seq4085 Length=47143 Score = 86.0 bits (94), Expect = 9e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 108011 TGGAGCCCCCACTCGGGATTGAACCGAGGACCTACTGCTTACAAGGCAGTTGCTCTACCA 108070 ||| ||||||| | || ||||||| | ||||||| ||||||||||| |||||||||||| Sbjct 41203 TGGTGCCCCCAGTAGGATTTGAACCCACGACCTACCGCTTACAAGGCGGTTGCTCTACCA 41262 Query 108071 CTGAGCTATA 108080 |||||||||| Sbjct 41263 CTGAGCTATA 41272 >seq4667 Length=397774 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 108310 CCGTATGGAATTCGAATCCATGTTACCGCCGTGAAAGGGCAGTGTCCTAGTCCACTAGAC 108369 ||||| || ||||||| || |||| ||||||||||||||| ||||||||| || |||||| Sbjct 6956 CCGTACGGGATTCGAACCCGTGTTGCCGCCGTGAAAGGGCGGTGTCCTAGGCCTCTAGAC 7015 Query 108370 GAACGG 108375 |||||| Sbjct 7016 GAACGG 7021 >seq4241 Length=507456 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 108310 CCGTATGGAATTCGAATCCATGTTACCGCCGTGAAAGGGCAGTGTCCTAGTCCACTAGAC 108369 ||||| || ||||||| || |||| ||||||||||||||| ||||||||| || |||||| Sbjct 399 CCGTACGGGATTCGAACCCGTGTTGCCGCCGTGAAAGGGCGGTGTCCTAGGCCTCTAGAC 458 Query 108370 GAACGG 108375 |||||| Sbjct 459 GAACGG 464 >seq2039 Length=36938 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 108310 CCGTATGGAATTCGAATCCATGTTACCGCCGTGAAAGGGCAGTGTCCTAGTCCACTAGAC 108369 ||||| || ||||||| || |||| ||||||||||||||| ||||||||| || |||||| Sbjct 32172 CCGTACGGGATTCGAACCCGTGTTGCCGCCGTGAAAGGGCGGTGTCCTAGGCCTCTAGAC 32231 Query 108370 GAACGG 108375 |||||| Sbjct 32232 GAACGG 32237 >seq30 Length=443100 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 108310 CCGTATGGAATTCGAATCCATGTTACCGCCGTGAAAGGGCAGTGTCCTAGTCCACTAGAC 108369 ||||| || ||||||| || |||| ||||||||||||||| ||||||||| || |||||| Sbjct 222890 CCGTACGGGATTCGAACCCGTGTTGCCGCCGTGAAAGGGCGGTGTCCTAGGCCTCTAGAC 222949 Query 108370 GAACGG 108375 |||||| Sbjct 222950 GAACGG 222955 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 108310 CCGTATGGAATTCGAATCCATGTTACCGCCGTGAAAGGGCAGTGTCCTAGTCCACTAGAC 108369 ||||| || ||||||| || |||| ||||||||||||||| ||||||||| || |||||| Sbjct 366812 CCGTACGGGATTCGAACCCGTGTTGCCGCCGTGAAAGGGCGGTGTCCTAGGCCTCTAGAC 366871 Query 108370 GAACGG 108375 |||||| Sbjct 366872 GAACGG 366877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 746170159590960