Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq5214 159 8e-34
seq5277 141 2e-28
seq4488 122 2e-22
>seq5214
Length=3698012
Score = 159 bits (176), Expect = 8e-34
Identities = 160/208 (77%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
|| || || || || |||||||| ||||||||||| || || | || ||||| || ||
Sbjct 3523170 TGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 3523111
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||| || || || | ||| ||||| ||||| ||||||||||| |||||||||||
Sbjct 3523110 TTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 3523051
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
||||| |||||||| | ||||| ||||| ||||| || || || ||||| || ||
Sbjct 3523050 GCTTTAACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTG 3522991
Query 104537 AGTGTTTTTACAAATATCTGCATTTTGT 104564
|| || || || || |||||||| ||||
Sbjct 3522990 AGGGTCTTAACGAAGATCTGCATCTTGT 3522963
>seq5277
Length=7425378
Score = 141 bits (156), Expect = 2e-28
Identities = 152/201 (76%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| |||||||||||||| || || || || ||||| | || ||||| || || || ||
Sbjct 1192980 GTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCCATCTTCAAGCTGCTTGCCG 1192921
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | ||| ||||| || || || || || || ||||||||||| || ||
Sbjct 1192920 GCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTC 1192861
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | |||||| ||| || ||||| | ||||| ||||| ||||| | ||
Sbjct 1192860 ACATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAGTAATGGTCTTGCCAGTCAAGGTC 1192801
Query 104543 TTTACAAATATCTGCATTTTG 104563
|| ||||| ||||||||||||
Sbjct 1192800 TTCACAAAGATCTGCATTTTG 1192780
Score = 131 bits (144), Expect = 4e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || ||||| || || ||||| || ||||| | ||| || || ||||| || |||
Sbjct 1193892 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCCAGTTGCTTACCA 1193833
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| || | ||| ||||| || || || || || || |||||||| || || |||
Sbjct 1193832 GCAAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCCTTT 1193773
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | |||||| || || || || || || || ||||| ||||| | ||
Sbjct 1193772 ACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGGGTGATGGTCTTGCCAGTTAAGGTC 1193713
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 1193712 TTCACGAAGATCTGCAT 1193696
Score = 118 bits (130), Expect = 2e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
|| || || || || ||||| || || || || || | || | || || || |||||
Sbjct 1193214 TGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGACAACGTACGGCCATCCTCCAGTTGC 1193155
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| ||||||||||| || | ||| ||||| || || || ||||| || ||||| |||||
Sbjct 1193154 TTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTG 1193095
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
|| || || || || | |||||| |||||| ||||| || || || ||||| || ||
Sbjct 1193094 GCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTCTTGCCCGTC 1193035
Query 104537 AGTGTTTTTACAAATATCTGCAT 104559
|| || || || || ||||||||
Sbjct 1193034 AGGGTCTTCACGAAGATCTGCAT 1193012
Score = 113 bits (124), Expect = 1e-19
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| || || || || ||||| ||||| |||| || || || || || || ||
Sbjct 1193664 GTCGATTCCTTTTGGATGTTGTAGTCGGATAGGGTTCGTCCATCCTCAAGCTGCTTGCCG 1193605
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|||||||| | | ||| ||||| || || || || || || ||||||||||| || ||
Sbjct 1193604 GCAAAAATCAATCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTC 1193545
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | |||||| |||||| ||||| || || || || || || || | ||
Sbjct 1193544 ACATTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTTCCGGTTAAGGTC 1193485
Query 104543 TTTACAAATATCTGCAT 104559
|| || || || |||||
Sbjct 1193484 TTCACGAAGATTTGCAT 1193468
>seq4488
Length=533506
Score = 122 bits (134), Expect = 2e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | || || || ||||| || || ||||| || || || | ||| ||
Sbjct 135516 AGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCC 135457
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| || || || || || || || || | ||| ||||| || || || || || || |||
Sbjct 135456 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 135397
Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527
|||||||| || || ||||| || | ||| ||| ||| || ||||| | || || |||
Sbjct 135396 TGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTGATGGTC 135337
Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || || || ||||| ||||| ||||||||
Sbjct 135336 TTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151318309806732
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |