Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5214 159 8e-34 seq5277 141 2e-28 seq4488 122 2e-22 >seq5214 Length=3698012 Score = 159 bits (176), Expect = 8e-34 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || |||||||| ||||||||||| || || | || ||||| || || Sbjct 3523170 TGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 3523111 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | ||| ||||| ||||| ||||||||||| ||||||||||| Sbjct 3523110 TTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 3523051 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | ||||| ||||| ||||| || || || ||||| || || Sbjct 3523050 GCTTTAACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTG 3522991 Query 104537 AGTGTTTTTACAAATATCTGCATTTTGT 104564 || || || || || |||||||| |||| Sbjct 3522990 AGGGTCTTAACGAAGATCTGCATCTTGT 3522963 >seq5277 Length=7425378 Score = 141 bits (156), Expect = 2e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||||||||| || || || || ||||| | || ||||| || || || || Sbjct 1192980 GTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCCATCTTCAAGCTGCTTGCCG 1192921 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| ||||| || || || || || || ||||||||||| || || Sbjct 1192920 GCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTC 1192861 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| ||| || ||||| | ||||| ||||| ||||| | || Sbjct 1192860 ACATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAGTAATGGTCTTGCCAGTCAAGGTC 1192801 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||||||||||| Sbjct 1192800 TTCACAAAGATCTGCATTTTG 1192780 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || ||||| || || ||||| || ||||| | ||| || || ||||| || ||| Sbjct 1193892 GTAGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCATCCTCCAGTTGCTTACCA 1193833 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| ||||| || || || || || || |||||||| || || ||| Sbjct 1193832 GCAAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATTTTGGCCTTT 1193773 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| || || || || || || || ||||| ||||| | || Sbjct 1193772 ACATTCTCAATGGTATCAGAGGGCTCAACTTCAAGGGTGATGGTCTTGCCAGTTAAGGTC 1193713 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1193712 TTCACGAAGATCTGCAT 1193696 Score = 118 bits (130), Expect = 2e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || ||||| || || || || || | || | || || || ||||| Sbjct 1193214 TGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGACAACGTACGGCCATCCTCCAGTTGC 1193155 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | ||| ||||| || || || ||||| || ||||| ||||| Sbjct 1193154 TTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTG 1193095 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || || || || | |||||| |||||| ||||| || || || ||||| || || Sbjct 1193094 GCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTCTTGCCCGTC 1193035 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 || || || || || |||||||| Sbjct 1193034 AGGGTCTTCACGAAGATCTGCAT 1193012 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || ||||| ||||| |||| || || || || || || || Sbjct 1193664 GTCGATTCCTTTTGGATGTTGTAGTCGGATAGGGTTCGTCCATCCTCAAGCTGCTTGCCG 1193605 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | ||| ||||| || || || || || || ||||||||||| || || Sbjct 1193604 GCAAAAATCAATCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTC 1193545 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | |||||| |||||| ||||| || || || || || || || | || Sbjct 1193544 ACATTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTTCCGGTTAAGGTC 1193485 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 1193484 TTCACGAAGATTTGCAT 1193468 >seq4488 Length=533506 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || ||||| || || || | ||| || Sbjct 135516 AGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCC 135457 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | ||| ||||| || || || || || || ||| Sbjct 135456 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 135397 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || ||||| || | ||| ||| ||| || ||||| | || || ||| Sbjct 135396 TGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTGATGGTC 135337 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || ||||| ||||| |||||||| Sbjct 135336 TTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151318309806732