Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq5074 149 4e-31 seq4674 91.5 1e-13 >seq5074 Length=4358836 Score = 149 bits (164), Expect = 4e-31 Identities = 322/475 (68%), Gaps = 19/475 (4%) Strand=Plus/Plus Query 25374 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCT 25433 || ||| ||| |||| || ||||| ||| | ||| ||||| ||||||||| || Sbjct 1652280 TTGATCAACAGCTTGGGGAATGGTCTCGGCGTTCGCTCCAGCTGCTCCTTCAGCGGCTCC 1652339 Query 25434 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGC 25493 ||||||| |||||||||||| | ||| |||| ||||| ||||| || || || | || Sbjct 1652340 ACGTGATTCAGGTAGACGTGCGTGTCGCCCATGGTGTGCACAAAGTCGCCTGGCTTCAGA 1652399 Query 25494 CCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACC 25553 || || || | || ||||||| ||||| || |||| ||||||||| ||||| || Sbjct 1652400 CCCGTTACATGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACG 1652459 Query 25554 CCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGC-TC- 25611 || | |||||||| | | ||| ||||| ||||| || ||||| || || ||| || Sbjct 1652460 CCCAGACCCATGTCGGCGC-TCCTTTGGTACAGCTGGCAGGAGAGTTCGCCG-CGCGTCT 1652517 Query 25612 -----ACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTT 25666 || || ||||| || | || ||||| || || || || | ||| Sbjct 1652518 GGGAGACATAGAACTGCGCCAGGCAGTGACACGGCGGCAGGGCCATTTTCGGAATGTCCG 1652577 Query 25667 TAGGGTTCCAGGCGCACACGATGATGCACCTGTCTTCTGGGTTGTCCCTGAT----AAGA 25722 || ||||| || ||| |||||||| |||||| || || | || ||| || Sbjct 1652578 ATGGATTCCATGCCGACATGATGATGCGCCTGTCCGAGGGATTATTCCGGATGGTGTCGA 1652637 Query 25723 TCCGCGGTGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGT 25781 || | | | ||| |||||| | ||| | || | |||||| | | || || | Sbjct 1652638 TCACC----TGTCGCAACTGATCGATGCCCTTTCCAGTGTAGTCGTCATCGCAGGTGC-C 1652692 Query 25782 GTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCA 25836 ||||| ||||| || | || ||||||||| ||||||||||| || || |||||| Sbjct 1652693 ATACTCCGCTCCAAAGTGCCGCCACTGGAAGCCGTACACCGGGCCCAGATCTCCA 1652747 >seq4674 Length=694708 Score = 91.5 bits (100), Expect = 1e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 40796 GACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGACGTCTATAAAATT 40855 ||||||||||||||| | ||| || ||||||||| ||||| || || || || || || Sbjct 523905 GACGCCGAGGTTGCCGCGGTAATCCTCGTCCACCACGCCGGCGCCCACATCGATGAAGTT 523964 Query 40856 TTCCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGGGGGCATCTTTAC 40915 | || |||||| || || | ||||| || | ||||||| |||| || | || || Sbjct 523965 CTTCACGGCCAGTCCAGAGCGTGGAGCAACGCGGCCGTAGGAGCCCTCCGGAACCTGCAC 524024 Query 40916 GGCCAGGTCCGTCTTTACCAGGGCCCTGCCAAAGGAGGGGACCAC 40960 |||||| ||||| || | |||| |||| || ||| ||||| Sbjct 524025 CTGCAGGTCGGTCTTCACAATGGCCTTGCCCCGGGCGGGAACCAC 524069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340115094476817