Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq4488 114 1e-20
seq4172 111 1e-19
seq5277 89.7 4e-13
>seq4488
Length=533506
Score = 114 bits (126), Expect = 1e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| ||||||| | | ||| | ||| || || |||||| || |||||||| || | |
Sbjct 135531 CCACCGCGCAGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 135472
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| || | |||||||||||||| ||| || | || | |||||||||||| ||
Sbjct 135471 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 135412
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | ||||||||| ||| || ||| | | | | ||||| |||| || |||| |
Sbjct 135411 ATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACC 135352
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
|| | || ||||| || |||||||| ||||||||||| |||||||| |||
Sbjct 135351 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCATGGTG 135301
>seq4172
Length=1033301
Score = 111 bits (122), Expect = 1e-19
Identities = 152/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576
|| ||||| | ||| |||||| || |||||||| || | || | || || | |||||
Sbjct 906758 ACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGAGTG-CGTCCATCCTC 906816
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||||||||| ||| || | || |||||||||||||| || | | ||||||||||
Sbjct 906817 CAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCTTCCTTGTCCTG 906876
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||| | | | | |||||||||| || ||| ||| | || ||||| ||
Sbjct 906877 GATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACCTCCAAAGTGATGGTCTT 906936
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| |||||||| || ||||| ||||||||
Sbjct 906937 GCCTGTGAGAGTCTTGACAAAGATCTGCAT 906966
Score = 109 bits (120), Expect = 5e-19
Identities = 173/247 (70%), Gaps = 1/247 (0%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| |||| | | || || ||||| || ||||| || ||||| ||||| | |
Sbjct 907424 CCTCCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGAC 907483
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
|| || |||||||||||||||| ||| || |||| |||||||||||||| ||
Sbjct 907484 AAAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGA 907543
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | ||||||||| || || ||| | | | | |||||||||| || ||| |
Sbjct 907544 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACC 907603
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTCT-TGATC 48738
|| | || ||||| || || || | ||| ||||| ||||| ||||| || || | ||
Sbjct 907604 TCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCATATTGGCTGTTTTC 907663
Query 48739 GAAGAAA 48745
|||||||
Sbjct 907664 GAAGAAA 907670
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| |||| | | || ||||| | ||| ||||||||| |||||||| || | |
Sbjct 906968 CCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 907027
Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
| | || || | |||||||||||||| ||| || |||| |||||||||||||| ||
Sbjct 907028 AGAGTG-CGTCCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGG 907086
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||||||||| || || ||| | | | |||||||||| || |||
Sbjct 907087 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAAGGCTCAAC 907146
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | || ||||| || ||||| | ||| || || || ||||||||
Sbjct 907147 CTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| ||||| | ||| |||||| || ||||| ||||| | ||| || | || ||
Sbjct 907213 CACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTACGTCCATCTTC 907272
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||||||||| ||| || | || |||||||||||||| || | | |||||||||
Sbjct 907273 CAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTG 907332
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||| | | | | |||||||||| || ||| ||| | || ||||| ||
Sbjct 907333 GATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTT 907392
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || ||||| ||||| || ||||||||
Sbjct 907393 GCCAGTCAGAGTCTTCACGAAGATCTGCAT 907422
>seq5277
Length=7425378
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574
||||| || || || ||| ||| || || |||||||| || | ||| || | |||
Sbjct 1194135 AACACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGACAAGGTACGGCCATCC 1194076
Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634
||||| |||||||| || |||| | |||||||||||| || | | || ||||||
Sbjct 1194075 TCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGGGAATGCCCTCTTTGTCC 1194016
Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694
|| || ||| | | | |||||||| | | ||| ||| | |||||||||
Sbjct 1194015 TGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGCTCAACCTCCAGAGTTATGGTT 1193956
Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|||||||| || || ||||| || || |||||
Sbjct 1193955 TTACCGGTCAGGGTCTTCACGAAGATTTGCAT 1193924
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|||||||| | | | ||| || ||||| || ||||| || ||||||||||| | |
Sbjct 1194378 CCTCCGCGTAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGAC 1194319
Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
| | || || ||||||||| |||||| ||| | | || ||||||||||| || ||
Sbjct 1194318 AGAGTG-CGTCCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGG 1194260
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||||||||| ||||| ||| | | | | ||||| || | | ||||
Sbjct 1194259 AATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCAC 1194200
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | ||| ||||| || || || || || ||||| || || |||||
Sbjct 1194199 CTCCAGTGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421223327519429
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |