Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq601 122 5e-23
seq5310 118 6e-22
seq5229 118 6e-22
seq5027 118 6e-22
seq4245 116 2e-21
>seq601
Length=1931879
Score = 122 bits (134), Expect = 5e-23
Identities = 83/93 (89%), Gaps = 1/93 (1%)
Strand=Plus/Plus
Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498
|||| ||||||| ||||||||||| |||||||||| |||||||||||||||||||
Sbjct 531240 TTAA-AAAAAATTGTTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 531298
Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531
|||||||||| ||||||||||||||||||||||
Sbjct 531299 ACGACGCTCTAACCAACTGAGCTAATGGGCCGT 531331
>seq5310
Length=763266
Score = 118 bits (130), Expect = 6e-22
Identities = 89/105 (85%), Gaps = 3/105 (3%)
Strand=Plus/Minus
Query 11429 AAATATAGAATTAATAAAAAA---TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCT 11485
||| ||| || ||||||||| | || |||||||||| |||||||||| ||||||
Sbjct 555514 AAAAATAAAAAAAATAAAAAAATGTAGAAATGGCCCATGAGGGGATCGAACCCGCGACCT 555455
Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 555454 TCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 555410
Score = 116 bits (128), Expect = 2e-21
Identities = 80/91 (88%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498
|||| |||| ||| | |||||||||| |||||||||| |||||||||||||||||||
Sbjct 548291 TTAAAAAAAGTTCAGACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 548350
Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||| |||| |||||||||||||||
Sbjct 548351 ACGACGCTCTAACCAGCTGAGCTAATGGGCC 548381
Score = 109 bits (120), Expect = 3e-19
Identities = 83/99 (84%), Gaps = 6/99 (6%)
Strand=Plus/Minus
Query 11437 AATTAATAAAAAA------TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490
|| |||||||||| ||| |||||||||| |||||||||| |||||||||||
Sbjct 549400 AAGTAATAAAAAAAGAGTATCATTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCG 549341
Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||| |||| |||||||||||||||
Sbjct 549340 TTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 549302
>seq5229
Length=2089089
Score = 118 bits (130), Expect = 6e-22
Identities = 83/94 (88%), Gaps = 1/94 (1%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499
|||||||||| | |||||||||| |||||||||| ||||||||||||||||||||
Sbjct 2074651 AATAAAAAATTGATCGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 2074592
Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533
||||||||| |||||||||||||||||||| |||
Sbjct 2074591 CGACGCTCTAACCAACTGAGCTAATGGGCCTTCG 2074558
>seq5027
Length=159368
Score = 118 bits (130), Expect = 6e-22
Identities = 81/91 (89%), Gaps = 1/91 (1%)
Strand=Plus/Plus
Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498
||| |||||| | | ||||||||||| |||||||||| |||||||||||||||||||
Sbjct 101726 TTATTAAAAAGTTAG-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 101784
Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||| ||||||||||||||||||||
Sbjct 101785 ACGACGCTCTAACCAACTGAGCTAATGGGCC 101815
Score = 116 bits (128), Expect = 2e-21
Identities = 86/100 (86%), Gaps = 1/100 (1%)
Strand=Plus/Plus
Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489
|||| |||||| | || ||| | ||||||||||| |||||||||| ||||||||||
Sbjct 102143 AATA-AGAATTCAAAATAAAATTAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGC 102201
Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||||||| |||| |||||||||||||||
Sbjct 102202 GTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 102241
Score = 114 bits (126), Expect = 7e-21
Identities = 80/91 (88%), Gaps = 2/91 (2%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498
|| |||| || | ||| ||||||||| |||||||||| |||||||||||||||||||
Sbjct 101287 AAAAAAACATAATATTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 101228
Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||| ||||||||||||||||||||
Sbjct 101227 ACGACGCTCTAACCAACTGAGCTAATGGGCC 101197
Score = 114 bits (126), Expect = 7e-21
Identities = 70/75 (93%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 101999 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 102058
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 102059 CTGAGCTAATGGGCC 102073
>seq4245
Length=1650430
Score = 116 bits (128), Expect = 2e-21
Identities = 71/76 (93%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 814665 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 814606
Query 11515 CTGAGCTAATGGGCCG 11530
||||||||||||||||
Sbjct 814605 CTGAGCTAATGGGCCG 814590
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261473898189604
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |