Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq601 122 5e-23 seq5310 118 6e-22 seq5229 118 6e-22 seq5027 118 6e-22 seq4245 116 2e-21 >seq601 Length=1931879 Score = 122 bits (134), Expect = 5e-23 Identities = 83/93 (89%), Gaps = 1/93 (1%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| ||||||| ||||||||||| |||||||||| ||||||||||||||||||| Sbjct 531240 TTAA-AAAAAATTGTTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 531298 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 |||||||||| |||||||||||||||||||||| Sbjct 531299 ACGACGCTCTAACCAACTGAGCTAATGGGCCGT 531331 >seq5310 Length=763266 Score = 118 bits (130), Expect = 6e-22 Identities = 89/105 (85%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAA---TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 ||| ||| || ||||||||| | || |||||||||| |||||||||| |||||| Sbjct 555514 AAAAATAAAAAAAATAAAAAAATGTAGAAATGGCCCATGAGGGGATCGAACCCGCGACCT 555455 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 555454 TCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCCG 555410 Score = 116 bits (128), Expect = 2e-21 Identities = 80/91 (88%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 |||| |||| ||| | |||||||||| |||||||||| ||||||||||||||||||| Sbjct 548291 TTAAAAAAAGTTCAGACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 548350 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||| ||||||||||||||| Sbjct 548351 ACGACGCTCTAACCAGCTGAGCTAATGGGCC 548381 Score = 109 bits (120), Expect = 3e-19 Identities = 83/99 (84%), Gaps = 6/99 (6%) Strand=Plus/Minus Query 11437 AATTAATAAAAAA------TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 || |||||||||| ||| |||||||||| |||||||||| ||||||||||| Sbjct 549400 AAGTAATAAAAAAAGAGTATCATTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCG 549341 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||| |||| ||||||||||||||| Sbjct 549340 TTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 549302 >seq5229 Length=2089089 Score = 118 bits (130), Expect = 6e-22 Identities = 83/94 (88%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||||| | |||||||||| |||||||||| |||||||||||||||||||| Sbjct 2074651 AATAAAAAATTGATCGTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 2074592 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 ||||||||| |||||||||||||||||||| ||| Sbjct 2074591 CGACGCTCTAACCAACTGAGCTAATGGGCCTTCG 2074558 >seq5027 Length=159368 Score = 118 bits (130), Expect = 6e-22 Identities = 81/91 (89%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 11439 TTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||| |||||| | | ||||||||||| |||||||||| ||||||||||||||||||| Sbjct 101726 TTATTAAAAAGTTAG-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 101784 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 101785 ACGACGCTCTAACCAACTGAGCTAATGGGCC 101815 Score = 116 bits (128), Expect = 2e-21 Identities = 86/100 (86%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 |||| |||||| | || ||| | ||||||||||| |||||||||| |||||||||| Sbjct 102143 AATA-AGAATTCAAAATAAAATTAGTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGC 102201 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||| |||| ||||||||||||||| Sbjct 102202 GTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 102241 Score = 114 bits (126), Expect = 7e-21 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || |||| || | ||| ||||||||| |||||||||| ||||||||||||||||||| Sbjct 101287 AAAAAAACATAATATTCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGC 101228 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| |||||||||||||||||||| Sbjct 101227 ACGACGCTCTAACCAACTGAGCTAATGGGCC 101197 Score = 114 bits (126), Expect = 7e-21 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 101999 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 102058 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 102059 CTGAGCTAATGGGCC 102073 >seq4245 Length=1650430 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 814665 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 814606 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||||||||||| Sbjct 814605 CTGAGCTAATGGGCCG 814590 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261473898189604