Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5075 93.3 7e-15 >seq5075 Length=1967217 Score = 93.3 bits (102), Expect = 7e-15 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| || || ||||||||||| || ||||||||||| ||||| Sbjct 663401 CGCCAAGCGTCATCGCAAGGTGCTCCGTGATAACATCCAGGGTATCACCAAGCCGGCTAT 663342 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || |||| ||||| || || || |||||| | ||||| ||| | || || || | Sbjct 663341 TCGCCGATTGGCCCGTCGCGGCGGTGTAAAGCGTATTTCTGGCTTGATTTACGAGGAAAC 663282 Query 16552 TCGTGATGT 16560 ||| | ||| Sbjct 663281 TCGCGGTGT 663273 Score = 80.6 bits (88), Expect = 4e-11 Identities = 91/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16571 TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACT 16630 ||||| ||| |||||||| ||| ||| || |||||||||||||| || || || ||| Sbjct 663204 TTCCTTGAGAACGTTATCCGTGACGCTGTCACGTATACCGAGCACGCCAAGCGCAAAACT 663145 Query 16631 GTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTT 16690 || ||| ||||||| | ||||| || | || || || || |||| | || |||||| Sbjct 663144 GTGACCGCCATGGACGTGGTCTACGCTCTCAAGCGCCAGGGACGTACCCTCTACGGTTTT 663085 Query 16691 GG 16692 || Sbjct 663084 GG 663083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070236227297