Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_006658.1
Length=30655
Score E
Sequences producing significant alignments: (Bits) Value
seq1301 96.9 7e-16
seq1430 87.8 4e-13
seq3254 82.4 1e-11
>seq1301
Length=3647
Score = 96.9 bits (106), Expect = 7e-16
Identities = 172/245 (70%), Gaps = 6/245 (2%)
Strand=Plus/Plus
Query 4472 ATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGT-TTAGATTTAGG-TTT 4529
||||| |||||||| ||||||| | ||| || || ||| ||| || | | || |||
Sbjct 3406 ATAAAGATAATTATATTATTCATTTAAAATATCTGCAACTTTGTATTCAACATGGGCTTT 3465
Query 4530 AGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATA 4589
| | || ||||| ||| | | | |||||| ||||| ||| | ||| | ||
Sbjct 3466 AAATA--AAAAAAATTCACAGAATACTAAAATTTAGACAATCTTGTTGGTTAAAACCCTA 3523
Query 4590 TATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTA 4649
||| ||| |||||| | ||||| ||||||| ||||| || |||||||| || ||
Sbjct 3524 TATAGATTTAAATACAAAACATAGAAAATTAGCTAAAAATGAATTTGAAAAAAATTTCTA 3583
Query 4650 TAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATA-AAG 4708
|||||||||||||||||| | | ||||| | ||||| || || ||||| | | ||
Sbjct 3584 TAAATTAATGAATAATGCTATATACGGAAAAAATATGGAAAACGT-GGAAAAGAGACGAG 3642
Query 4709 ATATA 4713
|||||
Sbjct 3643 ATATA 3647
>seq1430
Length=13653
Score = 87.8 bits (96), Expect = 4e-13
Identities = 159/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 4472 ATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGT-TTAGATTTAGGTTTA 4530
||||| |||||||| ||||||| | ||| || || ||| ||| || | | || |||
Sbjct 7299 ATAAAGATAATTATATTATTCATTTAAAATATCTGCAACTTTGTATTCAACATGGGCTTA 7358
Query 4531 GTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATAT 4590
|| ||||| ||| | | | |||||| ||||| ||| | ||| | |||
Sbjct 7359 AAATAAAAAAAAAT-CACAGAATACTAAAATTTAGACAATCTTGTTGGTTAAAACCCTAT 7417
Query 4591 ATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTAT 4650
|| ||| |||||| | ||||| ||| ||| ||||| || ||||||| || |||
Sbjct 7418 ATAGATTTAAATACAAAACATAGAAAATTAGTTAAAAATGAATTTTAAAAAAATTTCTAT 7477
Query 4651 AAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAA 4700
||||||||||||||||| | | ||||| || ||||| || || ||||
Sbjct 7478 AAATTAATGAATAATGCTATATACGGAAAAACTATGGAAAACGTGGGAAA 7527
>seq3254
Length=20891
Score = 82.4 bits (90), Expect = 1e-11
Identities = 126/176 (72%), Gaps = 3/176 (2%)
Strand=Plus/Plus
Query 4540 AAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAA 4599
||||| ||| | | | |||||| ||||| ||| | ||| | ||||| ||| |
Sbjct 446 AAAATTCACAGAATACTAAAATTTAGACAATCTTGTTGGTTAAAACCCTATATAGATTTA 505
Query 4600 AATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTT-TATAAATTAAT 4658
||||| | ||||| ||||||| ||| | || |||||||| ||| |||||||||||
Sbjct 506 AATACAAAACATAGAAAATTAGCTAAAAATTAATTTGAAAAAAAATTTCTATAAATTAAT 565
Query 4659 GAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATA-AAGATATA 4713
||||||||| | | ||||| || ||||| || || ||||| | | |||||||
Sbjct 566 GAATAATGCTATATACGGAAAAACTATGGAAAACGT-GGAAAAGAGACGAGATATA 620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 97968083651666
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |