Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq1301 96.9 7e-16 seq1430 87.8 4e-13 seq3254 82.4 1e-11 >seq1301 Length=3647 Score = 96.9 bits (106), Expect = 7e-16 Identities = 172/245 (70%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 4472 ATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGT-TTAGATTTAGG-TTT 4529 ||||| |||||||| ||||||| | ||| || || ||| ||| || | | || ||| Sbjct 3406 ATAAAGATAATTATATTATTCATTTAAAATATCTGCAACTTTGTATTCAACATGGGCTTT 3465 Query 4530 AGTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATA 4589 | | || ||||| ||| | | | |||||| ||||| ||| | ||| | || Sbjct 3466 AAATA--AAAAAAATTCACAGAATACTAAAATTTAGACAATCTTGTTGGTTAAAACCCTA 3523 Query 4590 TATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTA 4649 ||| ||| |||||| | ||||| ||||||| ||||| || |||||||| || || Sbjct 3524 TATAGATTTAAATACAAAACATAGAAAATTAGCTAAAAATGAATTTGAAAAAAATTTCTA 3583 Query 4650 TAAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATA-AAG 4708 |||||||||||||||||| | | ||||| | ||||| || || ||||| | | || Sbjct 3584 TAAATTAATGAATAATGCTATATACGGAAAAAATATGGAAAACGT-GGAAAAGAGACGAG 3642 Query 4709 ATATA 4713 ||||| Sbjct 3643 ATATA 3647 >seq1430 Length=13653 Score = 87.8 bits (96), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 4472 ATAAAAATAATTATGTTATTCACTATAAAAATTTGAAACAATGT-TTAGATTTAGGTTTA 4530 ||||| |||||||| ||||||| | ||| || || ||| ||| || | | || ||| Sbjct 7299 ATAAAGATAATTATATTATTCATTTAAAATATCTGCAACTTTGTATTCAACATGGGCTTA 7358 Query 4531 GTTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATAT 4590 || ||||| ||| | | | |||||| ||||| ||| | ||| | ||| Sbjct 7359 AAATAAAAAAAAAT-CACAGAATACTAAAATTTAGACAATCTTGTTGGTTAAAACCCTAT 7417 Query 4591 ATCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTAT 4650 || ||| |||||| | ||||| ||| ||| ||||| || ||||||| || ||| Sbjct 7418 ATAGATTTAAATACAAAACATAGAAAATTAGTTAAAAATGAATTTTAAAAAAATTTCTAT 7477 Query 4651 AAATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAA 4700 ||||||||||||||||| | | ||||| || ||||| || || |||| Sbjct 7478 AAATTAATGAATAATGCTATATACGGAAAAACTATGGAAAACGTGGGAAA 7527 >seq3254 Length=20891 Score = 82.4 bits (90), Expect = 1e-11 Identities = 126/176 (72%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 4540 AAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATATCGATAAA 4599 ||||| ||| | | | |||||| ||||| ||| | ||| | ||||| ||| | Sbjct 446 AAAATTCACAGAATACTAAAATTTAGACAATCTTGTTGGTTAAAACCCTATATAGATTTA 505 Query 4600 AATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTT-TATAAATTAAT 4658 ||||| | ||||| ||||||| ||| | || |||||||| ||| ||||||||||| Sbjct 506 AATACAAAACATAGAAAATTAGCTAAAAATTAATTTGAAAAAAAATTTCTATAAATTAAT 565 Query 4659 GAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAAATATA-AAGATATA 4713 ||||||||| | | ||||| || ||||| || || ||||| | | ||||||| Sbjct 566 GAATAATGCTATATACGGAAAAACTATGGAAAACGT-GGAAAAGAGACGAGATATA 620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97968083651666