Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_006936.1 Length=36674 Score E Sequences producing significant alignments: (Bits) Value seq1989 143 6e-30 >seq1989 Length=1118 Score = 143 bits (158), Expect = 6e-30 Identities = 243/350 (69%), Gaps = 3/350 (1%) Strand=Plus/Minus Query 6492 CGAAAAAATTAAGCAGTTGAAGACTTTTTACTCACTGCCAGAAAACCAGCAGAAAGCTAT 6551 ||| ||||| || ||| ||||||||| || | || |||| ||||| || |||| Sbjct 429 CGACAAAATCCGACAATTGGCGACTTTTTATTCGTTACCTAAAAAGCAGCAAAAGACTAT 370 Query 6552 TATGCTTTTATTTTCAGGCAAACA--AACACAAGGACGCATAGCTGAAAATGTTGGGGTC 6609 |||| | | ||||||||| || | ||| |||||| | ||||| ||||| || | Sbjct 369 TATGTTGCTGTTTTCAGGCGAAAATGAAC-CAAGGAGAAGTTGCTGATAATGTCGGCATA 311 Query 6610 GCACGGGTAACATTAACCTTGTGGCGGCAGAAAGACAAATTCAGGAAAGCCCAAGATGAA 6669 || | ||| | | ||| |||||||| | ||| || |||| || |||||| Sbjct 310 TCAAGAACAACCATTTCAGCATGGAAACAGAAAGAAATATTTAGACAAGCACAGGATGAA 251 Query 6670 TATAACCGGTTTATGCTACGGGATCTGACAAATGAAGCCATCTTAACTATGCGTGACTTG 6729 ||||| || |||||||| || || || || | || ||||| | || |||||||| || Sbjct 250 TATAATCGTTTTATGCTGCGTGACCTAACCAGCGAGGCCATTATGACAATGCGTGAGCTG 191 Query 6730 TTAAATTCTAGAAGCGAAATGGTACGTTTTAATGCAGCTAAAGACATTTTAGACCGCTCG 6789 ||| || | | ||||| ||||||||||||| ||| || || || ||| | ||||| || Sbjct 190 TTAGATGCACGTAGCGAGATGGTACGTTTTAGTGCTGCCAAGGATATTCTGGACCGGTCA 131 Query 6790 ATGAGTTACGAACAAACTCGCAAAATAAAGGCTGATGCAGAACTTGCCGA 6839 |||| | | | || | ||| ||| ||||||| ||||| |||| || Sbjct 130 ATGAATGATGCTCAGATTCGTAAAGCTGAGGCTGAAGCAGATATTGCTGA 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117227641919928