Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_006936.1
Length=36674
Score E
Sequences producing significant alignments: (Bits) Value
seq1989 143 6e-30
>seq1989
Length=1118
Score = 143 bits (158), Expect = 6e-30
Identities = 243/350 (69%), Gaps = 3/350 (1%)
Strand=Plus/Minus
Query 6492 CGAAAAAATTAAGCAGTTGAAGACTTTTTACTCACTGCCAGAAAACCAGCAGAAAGCTAT 6551
||| ||||| || ||| ||||||||| || | || |||| ||||| || ||||
Sbjct 429 CGACAAAATCCGACAATTGGCGACTTTTTATTCGTTACCTAAAAAGCAGCAAAAGACTAT 370
Query 6552 TATGCTTTTATTTTCAGGCAAACA--AACACAAGGACGCATAGCTGAAAATGTTGGGGTC 6609
|||| | | ||||||||| || | ||| |||||| | ||||| ||||| || |
Sbjct 369 TATGTTGCTGTTTTCAGGCGAAAATGAAC-CAAGGAGAAGTTGCTGATAATGTCGGCATA 311
Query 6610 GCACGGGTAACATTAACCTTGTGGCGGCAGAAAGACAAATTCAGGAAAGCCCAAGATGAA 6669
|| | ||| | | ||| |||||||| | ||| || |||| || ||||||
Sbjct 310 TCAAGAACAACCATTTCAGCATGGAAACAGAAAGAAATATTTAGACAAGCACAGGATGAA 251
Query 6670 TATAACCGGTTTATGCTACGGGATCTGACAAATGAAGCCATCTTAACTATGCGTGACTTG 6729
||||| || |||||||| || || || || | || ||||| | || |||||||| ||
Sbjct 250 TATAATCGTTTTATGCTGCGTGACCTAACCAGCGAGGCCATTATGACAATGCGTGAGCTG 191
Query 6730 TTAAATTCTAGAAGCGAAATGGTACGTTTTAATGCAGCTAAAGACATTTTAGACCGCTCG 6789
||| || | | ||||| ||||||||||||| ||| || || || ||| | ||||| ||
Sbjct 190 TTAGATGCACGTAGCGAGATGGTACGTTTTAGTGCTGCCAAGGATATTCTGGACCGGTCA 131
Query 6790 ATGAGTTACGAACAAACTCGCAAAATAAAGGCTGATGCAGAACTTGCCGA 6839
|||| | | | || | ||| ||| ||||||| ||||| |||| ||
Sbjct 130 ATGAATGATGCTCAGATTCGTAAAGCTGAGGCTGAAGCAGATATTGCTGA 81
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 117227641919928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |