Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq5375 127 2e-24 seq5242 84.2 2e-11 >seq5375 Length=646746 Score = 127 bits (140), Expect = 2e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 ||||| || || ||||| | | | ||||||||||||||||||||||||||||| ||||| Sbjct 627759 GAGGGCAAGATGCACGGCTTCTTGCGCATGTACTGGGCCAAAAAGATTCTCGAATGGACC 627818 Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGAC 71836 || || || | |||||| ||||| | || |||||||| | ||||| || || Sbjct 627819 GCCACGCCGGAACTGGCGCTGGAGTACGCGATCCTGCTAAACGACAAGTACAGCCTTGAT 627878 Query 71837 GGTCGCGATCCTAACGGTTATGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATA 71894 || |||||||| ||||| || || || ||||||||| ||| |||| | ||||||| Sbjct 627879 GGACGCGATCCCAACGGCTACGTGGGCTGCATGTGGTCCATCGGCGGCGTCCACGATA 627936 >seq5242 Length=5320397 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 119626 TGGCCGCTCCGAACCGCTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCT 119685 ||||| | || | |||| |||||||||||| || || || ||||| |||||||| | Sbjct 3387675 TGGCCACGCCCATGCGCTGGTACTCGCCCACCTTCTTCTCGAAGAAATTGGTCTTGCCGT 3387734 Query 119686 CAAGAGATATGTTATTCATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGC 119745 | || || || | | ||| || | ||| || || |||||| | |||| | || Sbjct 3387735 CCAGCGAGATCATCTCCATGAAGTTGAACGGGTTCTTGGTGTTGTAGATCTTGCCAACGC 3387794 Query 119746 CCAACTCGAACAACAGTCGATCTGCCACAAACTCGATGTATTCGCACAT 119794 ||||||| | || || ||||| ||||||||||| ||||| | | |||| Sbjct 3387795 CCAACTCCACCAGCAAGCGATCCGCCACAAACTCAATGTACTGGGACAT 3387843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478629916772880