Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5214 233 5e-56 >seq5214 Length=3698012 Score = 233 bits (258), Expect = 5e-56 Identities = 1106/1735 (64%), Gaps = 49/1735 (3%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || |||||||| ||| | ||||| || || || || |||||| | ||| | ||| Sbjct 3421969 GAGCGTCCGCAGCACATGCTGATGCGCGTGGCGATCGGAATCCATGGAGAGGACATCGAT 3421910 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACA 363567 || || | || || || || || || | || | ||||| |||||| ||||||| Sbjct 3421909 GCGGCCGTGGAGACCTACAACCTGCTGTCGGAGCGGTTCTTCACCCACGCCTCGCCAACG 3421850 Query 363568 ATGTACAATGCTGGAACTCGTAATC---CACAGATGTCTTCTTGCTTTCTTCTAAAAATG 363624 | | ||| | | | |||| | || |||| || ||||| || || | ||| Sbjct 3421849 CTTTT---TGCCGCAGCCACAAATCGGCCGCAACTGTCGTCGTGCTTCCTGCTGACCATG 3421793 Query 363625 AAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAG 363684 | || ||| || |||||||| ||||| | | | | | || || | || || || Sbjct 3421792 ACGGCCGACTCGATCGAGGGCATCTTCAAGTCGGTGGAACAGTGCGCCATGATCTCGAAA 3421733 Query 363685 AATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTC 363742 ||||| || ||||| || || |||| | || || || || | ||| Sbjct 3421732 TCGGCAGGAGGCATTGGACTGAATG--TCCATTGCATCCGGGCCAAGGGCACCTCCATCT 3421675 Query 363743 GCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTG 363802 ||||||| || ||| ||||| ||||| |||||||| | || || ||||| | Sbjct 3421674 GCGGCACGAATGGCACCTCCAATGGCCTGGTACCCATGCTCAGGGTCTTCAACAATGTGG 3421615 Query 363803 CGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGC 363862 | | ||||| || |||||||| || ||||| || || || || || || || |||| Sbjct 3421614 CACGTTACGTGGATCAGGGTGGCGGCAAGCGGCCCGGTGCCTTCGCCATTTACCTGGAGC 3421555 Query 363863 CTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAAT 363922 | || | || | || ||||| || || ||| ||| ||||| || || ||||| Sbjct 3421554 CCTGGCACTCGGACGTGTTCGAGTTCCTGGAACTCAAGAAGAACACCGGCAAGGAGGAGA 3421495 Query 363923 TGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGG 363982 || || || ||||| ||||| || || ||| | | || | ||| ||||| ||||| | Sbjct 3421494 ATCGCGCCCGCGATCTCTTCTACGCCCTCTGGATACCCGATCTTTTCATGAAACGCGTCG 3421435 Query 363983 AGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTAT 364042 |||| | | ||||| || | || || ||| |||| || || || |||||| | Sbjct 3421434 AGGCCAACGGGGACTGGTCGCTGATGTGTCCGCACAAATGCCCCGGCCTGCACGATGTGT 3421375 Query 364043 GGGGTGACGACTATGTT--GCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAA 364100 |||| || || | | ||| || ||| || || || |||||| || Sbjct 3421374 GGGGCGATGAGTTCGAAAAGCTGTACACGCAA--TACGAGCAGGAGGGCCGTGCGAACCG 3421317 Query 364101 GACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAAC 364160 ||| | |||||| | ||||| |||||||| || |||||| | || || || | Sbjct 3421316 GACGGTCAAGGCACAGTCCTTGTGGTTCGCCATCATTGAGTCGCAGGTGGAAACCGGCAA 3421257 Query 364161 ACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTAC 364220 || || ||| ||| ||| |||||||||||| | ||| |||||||||| | |||| || Sbjct 3421256 TCCGTACATGCTGTTCAAGGATTCGTGCAACAGGAAGAGCAACCAGCAGAATGTTGGCAC 3421197 Query 364221 AATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGC 364280 || || ||||| | || ||||| || |||| || |||| || ||||||| ||| Sbjct 3421196 CATCAAGTGCAGCAATTTGTGCACCGAAATCGTTGAGTATTCCGCGCCGGACGAGATTGC 3421137 Query 364281 CGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAA-----AGATGGTACTTTT 364335 || || ||||| || || || || || ||| || | ||| | || | | Sbjct 3421136 AGTGTGCAACCTGGCATCCATTGCCCTCAACATGTTCGTCACGCCCGAGAAG--ACGTAT 3421079 Query 364336 GACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAGGTTATC 364395 || | | | || | || || ||| | | ||| | |||||| ||||| | || Sbjct 3421078 GATTTCAAAAAACTGAAGGAAGTCACCAAGACGGTTACCAGAAATCTCAACAAGATAATT 3421019 Query 364396 GACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATT 364455 |||| || | |||||| | || || | || |||||| || | ||||| ||| | Sbjct 3421018 GACATCAACTTTTATCCCCTGCCAGAGACAAAGAAATCTAATTTGAGGCATCGTCCGGTG 3420959 Query 364456 GGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGA---TGGCATTTGAT 364512 || | ||||| ||||| ||||||||| | ||| |||| | | ||| || Sbjct 3420958 GGCATCGGTGTCCAGGGTTTCGCTGACGCCCT---GATTCTCATGCGATTCCCATACGAA 3420902 Query 364513 TCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATG 364572 || || || || | ||| || |||| || ||||| || || | | ||| || Sbjct 3420901 AGCGAGGAAGCCGGTCTTTTGAATCAGCAGATATTCGAAACCATTTACTACGGCGCCTTG 3420842 Query 364573 ACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGGTCCCCT 364632 || ||||| |||| | | | || || || || ||||| ||| Sbjct 3420841 GAAGCCAGCTGTGAGCTGGCGCAGGTCGAAGGTCCCTATGAAACCTACGAGGGCAGCCC- 3420783 Query 364633 CTTTCGCAGGGAAAAT-TCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATGGAA 364691 | | ||| || || | | |||| || | ||| | | ||| | | || ||| | Sbjct 3420782 CGTGAGCAAGGGAATTCTGCAGTACGACATGTGGGACAAGAAGCCCACGGACCTGTGGGA 3420723 Query 364692 CTGGGATACGCT--ACGT-TCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTAC 364748 ||| | | || | | |||| | ||| |||| ||| | |||||||| | Sbjct 3420722 TTGGCAGAAACTGAAGGAGTCCATC---AAGCAGCACGGTGTCAGGAACTCCCTGCTGGT 3420666 Query 364749 AGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACC 364808 || |||||||||||||| || ||||| || || | || |||||||| | ||||| || Sbjct 3420665 TGCACCCATGCCCACGGCATCCACTGCCCAAATAATGGGCAACAACGAATCTTTCGAGCC 3420606 Query 364809 GTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAA 364868 | |||| || |||| | || || ||||| ||||| ||||| | ||| || || | Sbjct 3420605 CTACACAACTAACATTTACACCCGGCGCGTTCTGTCCGGTGAATTCCAGGTGGTCAACCA 3420546 Query 364869 GTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATAT 364928 | | | | ||| | |||| | | |||||| ||| ||||||||| | || Sbjct 3420545 TCATTTGTTGAGGGACTTAACCGAGCTGGATTTGTGGGACGACGATATGAAGAACCAGAT 3420486 Query 364929 CATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGG--ATT-TCCAGAAGATCTGAAGCC 364985 ||| || | ||||| | ||||||||| ||| ||| ||||||| | | Sbjct 3420485 CATTTCCAGCAGGGGTTCAATCCAGAACATT-GAGGCCATTCCCCAGAAGGTTCG--CGA 3420429 Query 364986 TATTTACAAAACCGTATGGGAAATTTCCATGCGAACTC--TCATTGATATGGCGGCCGAT 365043 | ||||||| ||||| |||||||| ||| | ||| || ||| | ||||| || ||| Sbjct 3420428 TCTTTACAAGACCGTGTGGGAAATCTCC--GTGAAGTCCACAATTAAAATGGCCGCAGAT 3420371 Query 365044 CGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA--TGACTCAGCCAACCT 365101 || ||||| || ||| || || |||||||| ||| ||||| || | |||| | || Sbjct 3420370 CGTGGTGCGTTCATCGACCAAAGTCAGTCGTTCAAC--ATTCATGTGGCAGAGCCGAACT 3420313 Query 365102 CCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 || ||| || || ||||| || || ||| |||||| | || || ||||| || Sbjct 3420312 ACGGCAAACTGACGTCCATTCACTTTTACTCCTGGAAAGCTGGCCTCAAGACCGG 3420258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303262939945478