Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5214 86.0 5e-12 >seq5214 Length=3698012 Score = 86.0 bits (94), Expect = 5e-12 Identities = 304/462 (66%), Gaps = 16/462 (3%) Strand=Plus/Plus Query 131863 CACGGTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTT 131922 ||||||||| ||||| | |||||||| ||||| || | | ||| |||||||| ||||| Sbjct 3420206 CACGGTGAACTGAATCGCGTTCGCAGCTGGCTTTGTGCGCAGATAGTACATGCCGGTCTT 3420265 Query 131923 CAAGCCTTTCTCCCAAGAATAATTGTGTATGGACGATAAAATTTTGTAGCTGGGATTGGC 131982 | ||| | ||| || ||| ||| ||||||| | | |||| | || | || Sbjct 3420266 GAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGACGTCAGTTTGCCGTAGTTCGGCTCTGC 3420325 Query 131983 CACAAACAGATTGAGCGATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCATATT 132042 |||| | |||| ||| ||||| || |||||| | | || | ||||||||||| || Sbjct 3420326 CACATGAATGTTGAACGACTGACTTTGGTCGATGAACGCACCACGATCTGCGGCCAT-TT 3420384 Query 132043 CAACAAT--ACTTTCTGCTTAATTTCCCAAGCGGTCTTG--AAGAGCGCCTTGACGTCGT 132098 || | || ||| |||||||| |||||||| |||| ||| || | | Sbjct 3420385 TAATTGTGGAC-TTCACGGAGATTTCCCACACGGTCTTGTAAAGATCGC--GAACCTTCT 3420441 Query 132099 GTGGAATGTCATCGATATTCTGTACAGATCCGTTGTTTTTGATAATTTTCATCATCAGTT 132158 | |||||| | || || ||||| | || || || | || || | || ||| | Sbjct 3420442 GGGGAATGGCCTCAATGTTCTGGATTGAACCCCTGCTGGAAATGATCTGGTTCTTCATAT 3420501 Query 132159 CTGTCG-AGTACACGTTGCAGTCTACG---AGTTTATCGACGAGATGTTGATTTACTATT 132214 | |||| ||| | ||| || | ||| || || | ||| || || || | Sbjct 3420502 C-GTCGTCCCACA-AATCCAG-CTCGGTTAAGTCCCTCAAC-AAATGATGGTTGACCACC 3420557 Query 132215 TGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGTAAACGGCTCGAACGAT 132274 || ||||||| || | || | || ||| | ||| | || | |||||||| ||| Sbjct 3420558 TGGAATTCACCGGACAGAACGCGCCGGGTGTAAATGTTAGTTGTGTAGGGCTCGAAAGAT 3420617 Query 132275 TCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATG 132316 |||||||| |||| |||||| || || | |||||| |||||| Sbjct 3420618 TCGTTGTTGCCCATTATTTGGGCAGTGGATGCCGTGGGCATG 3420659 Score = 82.4 bits (90), Expect = 7e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | || ||| |||||| ||||||||||| || ||||| ||||| Sbjct 3523028 GATACTATCGAAAATGTTAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 3523087 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | || |||||||| || ||||||| | | | | || || |||||| Sbjct 3523088 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 3523147 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || || || | || || ||| Sbjct 3523148 ATTCAGAAGGAGTCCACTTTGCACTTGGTG 3523177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429907552881495