Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq4488 104 2e-17
seq5277 93.3 3e-14
seq4594 87.8 1e-12
seq4172 87.8 1e-12
>seq4488
Length=533506
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||| || || |||||||| || ||||||||||| | || ||| | |||
Sbjct 135516 AGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGACCATCC 135457
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|||| || ||||| || | || || ||||| || || || | |||||| |||||
Sbjct 135456 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTGTCC 135397
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
||| | |||||| | | | |||||| |||||| |||| |||||||||
Sbjct 135396 TGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTGATGGTC 135337
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| ||||| || ||||| ||||| ||||||||
Sbjct 135336 TTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305
>seq5277
Length=7425378
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | || |||| ||||| |||||||| || || ||||||||||| | |
Sbjct 1194150 CCACCCCGAAGACGCAACACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 1194091
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | ||||||| ||| || || || |||| || ||||| || || ||
Sbjct 1194090 AAGGTACGGCCATCCTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 1194031
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| |||||||||||| || || || |||||| | | | || || ||||||
Sbjct 1194030 ATGCCCTCTTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTATCAGAGGGCTCAA 1193973
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| || |||||||| |||||||| || || || || || |||||
Sbjct 1193972 CCTCCAGAGTTATGGTTTTACCGGTCAGGGTCTTCACGAAGATTTGCAT 1193924
>seq4594
Length=2557182
Score = 87.8 bits (96), Expect = 1e-12
Identities = 103/136 (76%), Gaps = 4/136 (3%)
Strand=Plus/Minus
Query 19396 TGCACGGTTTTCATGTGCACGAGTTTGGTGATACCAGCAACGGGTGCACGTCAGCAGGCG 19455
||||||| || |||||||||||||| || || | || |||||| |||| |||| | ||
Sbjct 2006696 TGCACGGATTCCATGTGCACGAGTTCGGGGACAACACCAACGGCTGCATGTCATCGGGGC 2006637
Query 19456 AGCATTTTAA-CCCCAC-GCATCAACAGCATGGTGCCCCCGACGCCGCAGAGCGGCACGT 19513
|||||| || ||| || ||| | ||||||| ||||||| || || || || ||| |
Sbjct 2006636 CGCATTTCAATCCCTACGGCA--AGGAGCATGGCGCCCCCGCCGACGAGGACCGCCACCT 2006579
Query 19514 TGGTGACCTGGGCAAC 19529
|| || |||||||||
Sbjct 2006578 GGGCGATCTGGGCAAC 2006563
>seq4172
Length=1033301
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | ||| |||| ||||| |||||||||||||| ||||||||||||| |
Sbjct 906968 CCTCCACGCAGACGCAGAACCAAATGCAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 907027
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || | ||||||| || || || || |||| | ||||| || || ||
Sbjct 907028 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGG 907087
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| || || || |||||| | | | || ||| |||||
Sbjct 907088 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCGATGGTATCGGAAGGCTCAA 907145
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| |||||||| || ||||||| || || || || ||||||||
Sbjct 907146 CCTCCAAAGTGATGGTCTTGCCGGTCAAAGTCTTAACGAAGATCTGCAT 907194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405061196972710
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |