Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq5305 145 5e-30
seq1894 136 3e-27
seq5277 127 1e-24
seq4172 109 4e-19
seq1990 98.7 7e-16
seq1968 98.7 7e-16
seq5214 93.3 3e-14
seq4488 87.8 1e-12
>seq5305
Length=688299
Score = 145 bits (160), Expect = 5e-30
Identities = 171/229 (75%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTG-CCAAGCTGCAGGACTTACTTGA 6433
||||||||||| | || || |||||||| | | || ||||||||| || ||| | ||
Sbjct 42392 AACGAGCGCTTTGTTGTGAATGGATCGCACGA-TGTGAACAAGCTGCAAGATTTATTGGA 42450
Query 6434 CGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTAT 6493
||||||||||||||||| ||| |||| | |||||||| |||||||||||| | | |
Sbjct 42451 TGGCTTTATTCGCAAGTTCGTGTTGTGCCCCGAATGCGACAACCCGGAGACCAATTTGAC 42510
Query 6494 TGTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGGTTACCATGGCAA 6553
||| ||| |||||| | || ||||| ||| ||||| || || || | |||||||
Sbjct 42511 TGTATCTGCCAAGAACCAGACTATCTCGCAGTCATGCAAGGCATGTGGCTTCCATGGCCT 42570
Query 6554 GCTGGATTTATCACACAAACTCAACACCTTCATACTGAAGAATCCTCCA 6602
|||| | | |||||| | ||||| ||||| |||| |||||||||
Sbjct 42571 GCTGAAGGTCAACCACAAAGTGAACACGTTCATTGTGAAAAATCCTCCA 42619
>seq1894
Length=1117
Score = 136 bits (150), Expect = 3e-27
Identities = 87/95 (92%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 918 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTAGGAATCTCGT 977
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 978 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1012
>seq5277
Length=7425378
Score = 127 bits (140), Expect = 1e-24
Identities = 165/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | |||||||||||| || | ||| |||||| || || |||||||| |||
Sbjct 1193238 CCACCACGAAGACGCAACACCAAGTGCAAAGTCGACTCCTTCTGGATGTTGTAATCCGAC 1193179
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| ||| | || || | ||| || || ||||| || || || || ||||| | ||||
Sbjct 1193178 AACGTACGGCCATCCTCCAGTTGCTTACCAGCAAAAATGAGACGCTGCTGATCTGGGGGG 1193119
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| |||||| || || |||||| |||| | ||||| | ||||||
Sbjct 1193118 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAACC 1193059
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | || || || || ||||||| ||| |||||||| |||||||||
Sbjct 1193058 TCCAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 1193011
Score = 109 bits (120), Expect = 4e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||| | ||||| ||||| ||| || || ||||| |||||||| ||
Sbjct 1193010 CCACCACGGAGACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAA 1192951
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | ||| | || || | || || |||||||| || || || || ||||| | |||
Sbjct 1192950 AGAGTACGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGA 1192891
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || |||||| ||| || ||||||||||| | ||||| | || ||
Sbjct 1192890 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTATCGGAAGGCTCGACC 1192831
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| || ||||| || || || |||||||| ||||| || |||||||| ||
Sbjct 1192830 TCCAAAGTAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 1192781
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | |||||||||||| || |||||| ||| || || || ||||| || |||
Sbjct 1194150 CCACCCCGAAGACGCAACACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCGAC 1194091
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
|| ||| | || || | ||| || || || || || || || || ||||| | |||
Sbjct 1194090 AAGGTACGGCCATCCTCCAGTTGCTTACCAGCGAAAATGAGACGCTGCTGATCTGGGGGA 1194031
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| ||||||||| || || |||||| |||| | ||||| |||||
Sbjct 1194030 ATGCCCTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTATCAGAGGGCTCAACC 1193971
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| | || || |||||||| |||| ||| |||||||| || ||||||
Sbjct 1193970 TCCAGAGTTATGGTTTTACCGGTCAGGGTCTTCACGAAGATTTGCATG 1193923
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | | ||| | ||||| ||||| || |||||||| || ||||| || ||
Sbjct 1193694 CCACCGCGAAGACGGAGGACCAAGTGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGAT 1193635
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| ||| | || || | || || |||||||| || | || || ||||| | |||
Sbjct 1193634 AGGGTTCGTCCATCCTCAAGCTGCTTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGGA 1193575
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || |||||| ||| || ||||||||||| | ||||| | ||||||
Sbjct 1193574 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTATCAGAAGGTTCAACC 1193515
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| | || || ||||| || || ||||| |||||||| || |||||
Sbjct 1193514 TCCAGAGTGATGGTTTTTCCGGTTAAGGTCTTCACGAAGATTTGCAT 1193468
Score = 89.7 bits (98), Expect = 3e-13
Identities = 150/217 (69%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
||| | |||||| ||||| || ||||| || || |||||||| |||| | ||| |
Sbjct 1194367 ACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCC 1194308
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
||| || || || || |||||||| || | || || || || | ||| | || || ||
Sbjct 1194307 GTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCCTT 1194248
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
|||| ||||| ||||||||||| | || || || || || | ||||||
Sbjct 1194247 GTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCACCTCCAGTGTAAT 1194188
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || || || | ||| |||||||| || ||||||
Sbjct 1194187 GGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCATG 1194151
>seq4172
Length=1033301
Score = 109 bits (120), Expect = 4e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
|| || | || ||||| ||||| ||||| || ||||| || || || ||||| |||
Sbjct 907424 CCTCCACGCAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTATAATCGGAC 907483
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
||| |||| |||| || | || |||||||| || || | || || ||||| | |||
Sbjct 907484 AAAGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGA 907543
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || || |||||| || || ||||||||||| || ||||| | |||||
Sbjct 907544 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACC 907603
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|| || || || || || || ||||| || |||||||| || ||||| ||
Sbjct 907604 TCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAAATTTGCATATT 907653
Score = 107 bits (118), Expect = 1e-18
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
||| | ||||||||| | |||| |||||| || || || ||||| ||||| |||| |
Sbjct 907207 ACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAATCGGACAAGGTACGTCC 907266
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
|| || | || |||||||| || || | || || ||||| | ||| | || || ||
Sbjct 907267 ATCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTT 907326
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
|||| || || ||||||||||| || ||||| | ||||| || || || ||
Sbjct 907327 GTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGAT 907386
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || || |||| || |||||||| |||||||||
Sbjct 907387 GGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 907423
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | || ||||| |||||||| | |||| |||||| || || ||||| || |||
Sbjct 906740 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 906799
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | ||| | || || | || |||||||| || || | || || ||||| | ||||
Sbjct 906800 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 906859
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||||| |||||| || || ||||||||||| || ||||| | || ||
Sbjct 906860 ATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCGACC 906919
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || || || || || || || | || || || || |||||||||
Sbjct 906920 TCCAAAGTGATGGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCATG 906967
>seq1990
Length=1060
Score = 98.7 bits (108), Expect = 7e-16
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 298 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 239
Query 20007 GGTAATATTTAG 20018
||| ||||||||
Sbjct 238 GGTTATATTTAG 227
>seq1968
Length=1099
Score = 98.7 bits (108), Expect = 7e-16
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTTACTATCGGTCTCAT 719
Query 20007 GGTAATATTTAG 20018
||| ||||||||
Sbjct 720 GGTTATATTTAG 731
>seq5214
Length=3698012
Score = 93.3 bits (102), Expect = 3e-14
Identities = 163/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||| | || ||||| |||||| || | |||| |||||| ||||| || || |||||
Sbjct 3523195 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 3523136
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
| || | || || | || || || || || || || || || ||||| | ||
Sbjct 3523135 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 3523076
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAA 38268
| |||||||||||| ||| || || ||||| | || |||||| | || ||| |
Sbjct 3523075 AATTCCTTCTTTGTCCTGAATCTTGGCTTTAACATTTTCGATAGTATC-CGACGGTTCGA 3523017
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323
| || | || || || || ||||| | ||| || ||||| |||||||| || ||
Sbjct 3523016 CCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTA 3522962
>seq4488
Length=533506
Score = 87.8 bits (96), Expect = 1e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | || || | ||||| ||| || || |||||| || || ||||| || |||
Sbjct 135531 CCACCGCGCAGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 135472
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| || | || || | || || ||||| || || || || || ||||| | |||
Sbjct 135471 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 135412
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| ||| || |||||| ||| || ||||||||||| || || || | || ||
Sbjct 135411 ATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACC 135352
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318
|| || || || || || || || | ||||||||| || |||||||||
Sbjct 135351 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCATG 135304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334925037904499
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