Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq5375 167 2e-36
seq5277 134 1e-26
seq4172 107 2e-18
seq5214 82.4 7e-11
>seq5375
Length=646746
Score = 167 bits (184), Expect = 2e-36
Identities = 215/297 (72%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 50989 AACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTCT 51048
||||| ||| |||||| |||||||| |||| | |||| ||||| ||| ||
Sbjct 628006 AACTTGCGCCGGCAGCCCTGATAGTTCATGTACCGAACCTTGCCGAAAATGGCGCGCTCC 627947
Query 51049 TTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGGA 51108
|| | | | ||||| || |||| || |||||||| || ||||| || ||| |||
Sbjct 627946 TTCCATCCCATATCGTGGACGCCGCCGATGGACCACATGCAGCCCACGTAGCCGTTGGGA 627887
Query 51109 TCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTCT 51168
||||| ||||| | |||||| | |||||||| | || || || ||| |||| ||
Sbjct 627886 TCGCGTCCATCAAGGCTGTACTTGTCGTTTAGCAGGATCGCGTACTCCAGCGCCAGTTCC 627827
Query 51169 GCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATC 51228
| | | |||||||| | ||| || ||||||||||||||||||| | | |||||||||
Sbjct 627826 GGCGTGGCGGTCCATTCGAGAATCTTTTTGGCCCAGTACATGCGCAAGAAGCCGTGCATC 627767
Query 51229 TTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGTTTGG 51285
|||||||||| |||||| ||| ||||||||||||| ||||||| ||| ||
Sbjct 627766 TTGCCCTCGCGCACCAGCTGCAGTTGCGCCGAGTTCCACAGGTCGTCGTAGGTTAGG 627710
>seq5277
Length=7425378
Score = 134 bits (148), Expect = 1e-26
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| | || || || |||| ||| | || |||||| | |||
Sbjct 1194152 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAGACCATTACACTGGAGGTGGAGCCATCT 1194211
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| ||||| |||||| ||||| || || ||||| || |||||
Sbjct 1194212 GACACCATTGAGAATGTGAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 1194271
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || ||||||||||| || || || || | |||||| || |||||||||
Sbjct 1194272 CAGCGTTTGATCTTTGCCGGCAAGCAGTTGGAGGACGGACGCACTCTGTCCGATTACAAC 1194331
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| || || ||||| || || || || ||||| | ||| | |||||||
Sbjct 1194332 ATCCAGAAGGAATCGACCCTTCACTTGGTGCTCCGTCTACGCGGAGGAA 1194380
Score = 113 bits (124), Expect = 4e-20
Identities = 155/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| ||||| ||||| || || |||| || | || || ||| | ||
Sbjct 1192783 AATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACTTTGGAGGTCGAGCCTTC 1192842
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || || ||| ||||| | || | ||| ||||| || || ||||| || || |
Sbjct 1192843 CGATACGATTGAGAATGTGAAGGCCAAGATTCAG-GACAAGGAGGGCATTCCCCCAGATC 1192901
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | || ||||||||||| || | ||||||| || ||| | ||||||||
Sbjct 1192902 AGCAGCGACTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGTACTCTTTCCGATTACA 1192961
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| ||||| ||||||||||| || || || || ||
Sbjct 1192962 ACATTCAGAAAGAATCCACCCTTCACTTGGTTCT 1192995
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| ||||||||||| |||| || | || || ||| | |||
Sbjct 1193924 ATGCAAATCTTCGTGAAGACCCTGACCGGTAAAACCATAACTCTGGAGGTTGAGCCCTCT 1193983
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| || || ||| ||||| || ||| |||||||| || ||||| || || ||
Sbjct 1193984 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCAGATCAG 1194043
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | ||||| || || || ||| | || |||| || || || || |||||
Sbjct 1194044 CAGCGTCTCATTTTCGCTGGTAAGCAACTGGAGGATGGCCGTACCTTGTCGGACTACAAC 1194103
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTG 25208
|| || ||||| ||||| || || || |||
Sbjct 1194104 ATCCAGAAAGAGTCCACTCTGCACTTGGTG 1194133
Score = 102 bits (112), Expect = 7e-17
Identities = 152/213 (71%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| || ||||| ||| ||||||| | || || || | |||
Sbjct 1193468 ATGCAAATCTTCGTGAAGACCTTAACCGGAAAAACCATCACTCTGGAGGTTGAACCTTCT 1193527
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || ||| ||||| | || | ||| ||||| || || ||||| || || ||
Sbjct 1193528 GATACCATTGAGAATGTGAAGGCCAAGATTCAG-GACAAGGAGGGCATTCCCCCAGATCA 1193586
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | |||||||||||||| || | || |||| || || | ||| |||||
Sbjct 1193587 GCAGCGATTGATTTTTGCCGGCAAGCAGCTTGAGGATGGACGAACCCTATCCGACTACAA 1193646
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| ||||| || || || || || ||
Sbjct 1193647 CATCCAAAAGGAATCGACCCTTCACTTGGTCCT 1193679
>seq4172
Length=1033301
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||||||||||| || ||||||| | || || ||| | ||
Sbjct 907194 ATGCAGATCTTCGTTAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCC 907135
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| || |||||| ||||| || ||| ||||| || || || || || || ||
Sbjct 907134 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 907075
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | ||||| ||||| || || | || |||| |||||| || ||| |||||
Sbjct 907074 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 907015
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| || ||||| | ||||| || ||
Sbjct 907014 ATCCAAAAGGAGTCCACTTTGCATTTGGTTCT 906983
Score = 98.7 bits (108), Expect = 9e-16
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||||||||| || || ||||||| | || || ||| | ||
Sbjct 907650 ATGCAAATTTTCGTGAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCTTCC 907591
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| || |||||| ||||| || ||| ||||| || || ||||| || || ||
Sbjct 907590 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 907531
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | ||||| ||||| || || | || || | || ||| || |||||| ||
Sbjct 907530 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTATAAC 907471
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || ||||| || || || || || ||
Sbjct 907470 ATCCAGAAGGAATCGACCCTTCACTTGGTCCT 907439
>seq5214
Length=3698012
Score = 82.4 bits (90), Expect = 7e-11
Identities = 149/215 (69%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || ||||||| | || || || ||||
Sbjct 3522968 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 3523027
Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115
|| |||||||| | || |||| || | ||| ||||||||||| ||||| || ||
Sbjct 3523028 GATACTATCGAA--AATGTTAAAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGAT 3523084
Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175
|| ||||| | || || || ||||| || | ||||||| ||||| | || ||
Sbjct 3523085 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 3523144
Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| || || ||||| | || || |||||
Sbjct 3523145 AACATTCAGAAGGAGTCCACTTTGCACTTGGTGCT 3523179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433299328446635
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |