Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5375 167 2e-36 seq5277 134 1e-26 seq4172 107 2e-18 seq5214 82.4 7e-11 >seq5375 Length=646746 Score = 167 bits (184), Expect = 2e-36 Identities = 215/297 (72%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 50989 AACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTCT 51048 ||||| ||| |||||| |||||||| |||| | |||| ||||| ||| || Sbjct 628006 AACTTGCGCCGGCAGCCCTGATAGTTCATGTACCGAACCTTGCCGAAAATGGCGCGCTCC 627947 Query 51049 TTGAACGGCCTGTCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGTTAGGA 51108 || | | | ||||| || |||| || |||||||| || ||||| || ||| ||| Sbjct 627946 TTCCATCCCATATCGTGGACGCCGCCGATGGACCACATGCAGCCCACGTAGCCGTTGGGA 627887 Query 51109 TCGCGACCATCCACGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCCATGTCT 51168 ||||| ||||| | |||||| | |||||||| | || || || ||| |||| || Sbjct 627886 TCGCGTCCATCAAGGCTGTACTTGTCGTTTAGCAGGATCGCGTACTCCAGCGCCAGTTCC 627827 Query 51169 GCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATC 51228 | | | |||||||| | ||| || ||||||||||||||||||| | | ||||||||| Sbjct 627826 GGCGTGGCGGTCCATTCGAGAATCTTTTTGGCCCAGTACATGCGCAAGAAGCCGTGCATC 627767 Query 51229 TTGCCCTCGCAACGAAGCTGCGCTTGAGCCGAGTTCCACAATTCGTCGTGAGTTTGG 51285 |||||||||| |||||| ||| ||||||||||||| ||||||| ||| || Sbjct 627766 TTGCCCTCGCGCACCAGCTGCAGTTGCGCCGAGTTCCACAGGTCGTCGTAGGTTAGG 627710 >seq5277 Length=7425378 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | || || || |||| ||| | || |||||| | ||| Sbjct 1194152 ATGCAAATCTTCGTGAAGACCCTAACTGGCAAGACCATTACACTGGAGGTGGAGCCATCT 1194211 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| |||||| ||||| || || ||||| || ||||| Sbjct 1194212 GACACCATTGAGAATGTGAAGGCTAAAATCCAGGACAAGGAGGGAATTCCCCCAGACCAG 1194271 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || || || || | |||||| || ||||||||| Sbjct 1194272 CAGCGTTTGATCTTTGCCGGCAAGCAGTTGGAGGACGGACGCACTCTGTCCGATTACAAC 1194331 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || ||||| || || || || ||||| | ||| | ||||||| Sbjct 1194332 ATCCAGAAGGAATCGACCCTTCACTTGGTGCTCCGTCTACGCGGAGGAA 1194380 Score = 113 bits (124), Expect = 4e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| ||||| || || |||| || | || || ||| | || Sbjct 1192783 AATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATTACTTTGGAGGTCGAGCCTTC 1192842 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || ||| ||||| | || | ||| ||||| || || ||||| || || | Sbjct 1192843 CGATACGATTGAGAATGTGAAGGCCAAGATTCAG-GACAAGGAGGGCATTCCCCCAGATC 1192901 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||||||||| || | ||||||| || ||| | |||||||| Sbjct 1192902 AGCAGCGACTGATCTTTGCCGGCAAGCAGCTTGAAGATGGCCGTACTCTTTCCGATTACA 1192961 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | ||||| ||||||||||| || || || || || Sbjct 1192962 ACATTCAGAAAGAATCCACCCTTCACTTGGTTCT 1192995 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||||||||| |||| || | || || ||| | ||| Sbjct 1193924 ATGCAAATCTTCGTGAAGACCCTGACCGGTAAAACCATAACTCTGGAGGTTGAGCCCTCT 1193983 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || ||| ||||| || ||| |||||||| || ||||| || || || Sbjct 1193984 GATACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCAGATCAG 1194043 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| || || || ||| | || |||| || || || || ||||| Sbjct 1194044 CAGCGTCTCATTTTCGCTGGTAAGCAACTGGAGGATGGCCGTACCTTGTCGGACTACAAC 1194103 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || || ||||| ||||| || || || ||| Sbjct 1194104 ATCCAGAAAGAGTCCACTCTGCACTTGGTG 1194133 Score = 102 bits (112), Expect = 7e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| || ||||| ||| ||||||| | || || || | ||| Sbjct 1193468 ATGCAAATCTTCGTGAAGACCTTAACCGGAAAAACCATCACTCTGGAGGTTGAACCTTCT 1193527 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| ||||| | || | ||| ||||| || || ||||| || || || Sbjct 1193528 GATACCATTGAGAATGTGAAGGCCAAGATTCAG-GACAAGGAGGGCATTCCCCCAGATCA 1193586 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | |||||||||||||| || | || |||| || || | ||| ||||| Sbjct 1193587 GCAGCGATTGATTTTTGCCGGCAAGCAGCTTGAGGATGGACGAACCCTATCCGACTACAA 1193646 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| ||||| || || || || || || Sbjct 1193647 CATCCAAAAGGAATCGACCCTTCACTTGGTCCT 1193679 >seq4172 Length=1033301 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||| || ||||||| | || || ||| | || Sbjct 907194 ATGCAGATCTTCGTTAAGACTTTGACCGGCAAGACCATCACTTTGGAGGTTGAGCCTTCC 907135 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| ||||| || ||| ||||| || || || || || || || Sbjct 907134 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAG 907075 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| ||||| || || | || |||| |||||| || ||| ||||| Sbjct 907074 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGATGGACGCACTCTGTCCGACTACAAC 907015 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || ||||| | ||||| || || Sbjct 907014 ATCCAAAAGGAGTCCACTTTGCATTTGGTTCT 906983 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||||||||| || || ||||||| | || || ||| | || Sbjct 907650 ATGCAAATTTTCGTGAAGACTTTGACTGGCAAGACCATCACTTTGGAGGTTGAGCCTTCC 907591 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| ||||| || ||| ||||| || || ||||| || || || Sbjct 907590 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 907531 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| ||||| || || | || || | || ||| || |||||| || Sbjct 907530 CAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGTACTTTGTCCGATTATAAC 907471 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| || || || || || || Sbjct 907470 ATCCAGAAGGAATCGACCCTTCACTTGGTCCT 907439 >seq5214 Length=3698012 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || || |||| Sbjct 3522968 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 3523027 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || |||||||| | || |||| || | ||| ||||||||||| ||||| || || Sbjct 3523028 GATACTATCGAA--AATGTTAAAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGAT 3523084 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || || || ||||| || | ||||||| ||||| | || || Sbjct 3523085 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 3523144 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || ||||| | || || ||||| Sbjct 3523145 AACATTCAGAAGGAGTCCACTTTGCACTTGGTGCT 3523179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433299328446635