Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq4594 98.7 1e-15 >seq4594 Length=2557182 Score = 98.7 bits (108), Expect = 1e-15 Identities = 224/336 (67%), Gaps = 11/336 (3%) Strand=Plus/Minus Query 127538 GGTTTGCACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCG 127597 ||| ||||||| || || |||||||||||||| |||| | ||||| |||| ||| || Sbjct 2006700 GGTCTGCACGGATTCCATGTGCACGAGTTCGGGGACAACACCAACGGCTGCATGTCATCG 2006641 Query 127598 GGGGAACACTTCAATCCCACCGGTATGGATCACGGAGCGCCCAACGCGCTCGTTCGTCAC 127657 ||| || ||||||||| ||| | ||| || || || ||| || | || ||| Sbjct 2006640 GGGCCGCATTTCAATCCCTACGGCAAGGAGCATGGCGCCCCCGCCGACGAGGACCGCCAC 2006581 Query 127658 GTTGGCGACCTGGGCAACGTGGAGGCGGCTAGCAGCAATTCTTTGAC---CGAA-GTCAA 127713 | ||||| ||||||||| | ||||| || || | || | |||| ||||| Sbjct 2006580 CTGGGCGATCTGGGCAACATTGAGGCCACTGGCGAC-------TGCCCCACGAAGGTCAA 2006528 Query 127714 CATCATCGACCACGTCATGTCTCTGTACGGACCGAACAGCGTCATCGGTAGGAGTCTGGT 127773 |||| |||| || | |||| ||| | ||||| ||||||| | | |||| Sbjct 2006527 CATCTCCGACTCGAGGATCACGCTGTTCGGCGCCGACAGCATCATCGGACGCACCGTGGT 2006468 Query 127774 CGTGCACACGGATCGTGACGATCTCGGCCTGACCGATCATTATTTGAGCAAAACCACCGG 127833 || ||| | ||| || ||||||||| | | || | ||||||| |||| || Sbjct 2006467 GGTCCACGCCGATGCCGATGATCTCGGCAAGGGTGGCCACGAGCTGAGCAAGTCCACGGG 2006408 Query 127834 CAACTCGGGCGGTCGGTTGGGGTGCGGGATCATTGG 127869 |||| | || | ||| | || ||||| ||||||| Sbjct 2006407 CAACGCCGGTGCTCGCATTGGATGCGGCGTCATTGG 2006372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537566716902840