Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5242 248 1e-60 seq5036 120 3e-22 seq5056 113 5e-20 seq5108 111 2e-19 >seq5242 Length=5320397 Score = 248 bits (274), Expect = 1e-60 Identities = 555/826 (67%), Gaps = 12/826 (1%) Strand=Plus/Plus Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865 ||||| || || || || || || |||||||| ||||| || |||| || ||| | | Sbjct 3387692 TGGTACTCGCCCACCTTCTTCTCGAAGAAATTGGTCTTGCCGTCCAGCGAGATCATCTCC 3387751 Query 92866 ACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAATAAT 92923 | | ||| || ||||||| ||| || ||| || || |||||| || || Sbjct 3387752 ATGAAGTTGAACGGGTTCTTGGTGTTGTAGATCTTGCCAACGCCCAACTCCACCAGCAAG 3387811 Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 | ||| || ||||| || |||||||| ||||||| ||||| ||||| || || || || Sbjct 3387812 CGATCCGCCACAAACTCAATGTACTGGGACATCAGGTCACAGTTCATGCC--GATGAGGT 3387869 Query 92984 --ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTT 93041 ||||| || ||||| || | ||| || | ||| || | || || || | ||| | Sbjct 3387870 TCACAGGCAGGGCGTCTGTGAGGAACTCCTGCTCAATGAGCACCGCATCGCGGATGATCT 3387929 Query 93042 CTATTA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG-CAA 93098 | || | | || | ||| || || || | | | | |||| | ||||| | | Sbjct 3387930 CGATGATGCGCTCGCGTCTGG--GTCGCTGCACCAGGTGCTGGAACATCA-GCACGGCGA 3387986 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 |||| || || || ||||| || || |||| ||| ||| ||| || | || || | Sbjct 3387987 AGTCACAGTGCAATCCCTCGTCGCGGGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCA 3388046 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 ||| || || ||||| ||||| || || || || || || || || || || || | Sbjct 3388047 TCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCT 3388106 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATT 93278 ||||||| |||||||| | || || || | ||||| || || || | |||||| Sbjct 3388107 CCACGGCGGCAAATGCGATGATGCGCTCCCCGAAATTGGCCGACTTGGAGGAGATCCAGG 3388166 Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338 | |||||| || || || ||| | || | || ||||| ||||| || |||| Sbjct 3388167 ACAGAGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTCTCGATGGCGTTGAACAGGT 3388226 Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398 | || |||| || || ||| || ||||| || ||||| | || ||||| || || | Sbjct 3388227 ACTCCCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACGCTGTACATCTCCGAGT 3388286 Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458 | || |||||||| || || ||||| |||||||| || | || |||||||||||||| | Sbjct 3388287 GCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCCGTGATCTGCACCT 3388346 Query 93459 CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaG 93518 | || || | ||| || || || |||||||| || |||||||| || ||||| || | Sbjct 3388347 CCTGGCTGAACCGCTCCACCAGGTTCTCATTGACGATGCCATCGGAGGCGGCAAAGAAGG 3388406 Query 93519 CCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGAT 93578 ||| | ||| || || || ||| || || || || | ||| |||| || | Sbjct 3388407 CCAGCACGTGCGAGATGAAGTGACGCTCGTCGTCCTTGAGGCGGTGCCAGTCGGTCAGGT 3388466 Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 | || || ||||| || || || || ||||| || || || || || Sbjct 3388467 CCTTGGACAGATCCACCTCCTCTACGGTCCAGAAAGAGGCCTCAGC 3388512 >seq5036 Length=2913872 Score = 120 bits (132), Expect = 3e-22 Identities = 80/88 (91%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| |||||||||||||||||||||| |||||||| | | ||| Sbjct 395727 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAG 395786 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||||| Sbjct 395787 CGTGGGTTCGAACCCCACACCTGACAAA 395814 Score = 107 bits (118), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||| ||||||||||||| |||||||||||||||||||||| |||||||| | | ||| Sbjct 238783 CAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGAG 238842 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||| || Sbjct 238843 CGTGGGTTCGAACCCCACACCTGGCA 238868 >seq5056 Length=3529635 Score = 113 bits (124), Expect = 5e-20 Identities = 79/89 (89%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||| ||||||||||||| |||||||||||||||||||||| |||||||| | | || Sbjct 920216 ACAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGA 920275 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||| |||| Sbjct 920276 GCGTGGGTTCGAACCCCACACCTGGCAAA 920304 >seq5108 Length=3483747 Score = 111 bits (122), Expect = 2e-19 Identities = 78/88 (89%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||| ||||||||||||| |||||||||||||||||||||| |||||||| | | ||| Sbjct 300774 CAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAG 300715 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||| |||| Sbjct 300714 CGTGGGTTCGAACCCCACACCTGGCAAA 300687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556823010033960