Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq5242 248 1e-60
seq5036 120 3e-22
seq5056 113 5e-20
seq5108 111 2e-19
>seq5242
Length=5320397
Score = 248 bits (274), Expect = 1e-60
Identities = 555/826 (67%), Gaps = 12/826 (1%)
Strand=Plus/Plus
Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865
||||| || || || || || || |||||||| ||||| || |||| || ||| | |
Sbjct 3387692 TGGTACTCGCCCACCTTCTTCTCGAAGAAATTGGTCTTGCCGTCCAGCGAGATCATCTCC 3387751
Query 92866 ACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAATAAT 92923
| | ||| || ||||||| ||| || ||| || || |||||| || ||
Sbjct 3387752 ATGAAGTTGAACGGGTTCTTGGTGTTGTAGATCTTGCCAACGCCCAACTCCACCAGCAAG 3387811
Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983
| ||| || ||||| || |||||||| ||||||| ||||| ||||| || || || ||
Sbjct 3387812 CGATCCGCCACAAACTCAATGTACTGGGACATCAGGTCACAGTTCATGCC--GATGAGGT 3387869
Query 92984 --ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTT 93041
||||| || ||||| || | ||| || | ||| || | || || || | ||| |
Sbjct 3387870 TCACAGGCAGGGCGTCTGTGAGGAACTCCTGCTCAATGAGCACCGCATCGCGGATGATCT 3387929
Query 93042 CTATTA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG-CAA 93098
| || | | || | ||| || || || | | | | |||| | ||||| | |
Sbjct 3387930 CGATGATGCGCTCGCGTCTGG--GTCGCTGCACCAGGTGCTGGAACATCA-GCACGGCGA 3387986
Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158
|||| || || || ||||| || || |||| ||| ||| ||| || | || || |
Sbjct 3387987 AGTCACAGTGCAATCCCTCGTCGCGGGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCA 3388046
Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218
||| || || ||||| ||||| || || || || || || || || || || || |
Sbjct 3388047 TCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCT 3388106
Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATT 93278
||||||| |||||||| | || || || | ||||| || || || | ||||||
Sbjct 3388107 CCACGGCGGCAAATGCGATGATGCGCTCCCCGAAATTGGCCGACTTGGAGGAGATCCAGG 3388166
Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGT 93338
| |||||| || || || ||| | || | || ||||| ||||| || ||||
Sbjct 3388167 ACAGAGCCCAGTCAGCCTTGCGCTTCACCGCCGGCATCGTCTCGATGGCGTTGAACAGGT 3388226
Query 93339 AATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAAT 93398
| || |||| || || ||| || ||||| || ||||| | || ||||| || || |
Sbjct 3388227 ACTCCCGCTGGTGCGGATCCCGGATGTAAGTGTCGATCAGCACGCTGTACATCTCCGAGT 3388286
Query 93399 GGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTT 93458
| || |||||||| || || ||||| |||||||| || | || |||||||||||||| |
Sbjct 3388287 GCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGGGCCTCCGTGATCTGCACCT 3388346
Query 93459 CTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaG 93518
| || || | ||| || || || |||||||| || |||||||| || ||||| || |
Sbjct 3388347 CCTGGCTGAACCGCTCCACCAGGTTCTCATTGACGATGCCATCGGAGGCGGCAAAGAAGG 3388406
Query 93519 CCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGAT 93578
||| | ||| || || || ||| || || || || | ||| |||| || |
Sbjct 3388407 CCAGCACGTGCGAGATGAAGTGACGCTCGTCGTCCTTGAGGCGGTGCCAGTCGGTCAGGT 3388466
Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
| || || ||||| || || || || ||||| || || || || ||
Sbjct 3388467 CCTTGGACAGATCCACCTCCTCTACGGTCCAGAAAGAGGCCTCAGC 3388512
>seq5036
Length=2913872
Score = 120 bits (132), Expect = 3e-22
Identities = 80/88 (91%), Gaps = 2/88 (2%)
Strand=Plus/Plus
Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321
||||||||||||||||| |||||||||||||||||||||| |||||||| | | |||
Sbjct 395727 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAG 395786
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349
||||||||||||||||||||||||||||
Sbjct 395787 CGTGGGTTCGAACCCCACACCTGACAAA 395814
Score = 107 bits (118), Expect = 2e-18
Identities = 76/86 (88%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321
||| ||||||||||||| |||||||||||||||||||||| |||||||| | | |||
Sbjct 238783 CAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGAG 238842
Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347
||||||||||||||||||||||| ||
Sbjct 238843 CGTGGGTTCGAACCCCACACCTGGCA 238868
>seq5056
Length=3529635
Score = 113 bits (124), Expect = 5e-20
Identities = 79/89 (89%), Gaps = 2/89 (2%)
Strand=Plus/Plus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320
|||| ||||||||||||| |||||||||||||||||||||| |||||||| | | ||
Sbjct 920216 ACAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGA 920275
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA 126349
|||||||||||||||||||||||| ||||
Sbjct 920276 GCGTGGGTTCGAACCCCACACCTGGCAAA 920304
>seq5108
Length=3483747
Score = 111 bits (122), Expect = 2e-19
Identities = 78/88 (89%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321
||| ||||||||||||| |||||||||||||||||||||| |||||||| | | |||
Sbjct 300774 CAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAG 300715
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349
||||||||||||||||||||||| ||||
Sbjct 300714 CGTGGGTTCGAACCCCACACCTGGCAAA 300687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556823010033960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |