Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq5242 98.7 2e-15
seq5074 98.7 2e-15
seq5277 91.5 3e-13
seq5243 91.5 3e-13
seq5027 91.5 3e-13
seq5310 89.7 1e-12
seq5245 89.7 1e-12
>seq5242
Length=5320397
Score = 98.7 bits (108), Expect = 2e-15
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
||||||||||| | |||||| ||||| ||||| | ||||||||||| ||| ||||| ||
Sbjct 3387713 TCGAAGAAATTGGTCTTGCCGTCCAGCGAGATCATCTCCATGAAGTTGAACGGGTTCTTG 3387772
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| ||||| |||| | ||| | | || | | ||| || ||||||||||| |
Sbjct 3387773 GTGTTGTAGATCTTGCCAACGCCCAACTCCACCAGCAAGCGATCCGCCACAAACTCAATG 3387832
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714
||||| |||||| ||| |||||||||| ||
Sbjct 3387833 TACTGGGACATCAGGTCACAGTTCATGCCGAT 3387864
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111
|||| || ||||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 3008422 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 3008363
Query 142112 CCCCGCCAGAGA 142123
|||||| || ||
Sbjct 3008362 CCCCGCAAGGGA 3008351
>seq5074
Length=4358836
Score = 98.7 bits (108), Expect = 2e-15
Identities = 317/490 (65%), Gaps = 4/490 (1%)
Strand=Plus/Plus
Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577
||||| ||| || |||| | ||||| |||||| || ||||| |||||||||
Sbjct 3524332 GACTTTATCAACCTGGAGTTGATTCTGTTCTCGAATGCGGACAACGAGCGCTCTATTCCC 3524391
Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637
|| |||| ||||| || ||||| ||||| ||| | | || || |||||| ||
Sbjct 3524392 AGTCTGGTCGATGGGCTGAAGCCCGGCCAGCGCAAGGTGATGTTCACCTGCTTCAAGAGG 3524451
Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697
||| | || | |||||||| ||| | || |||| || | || || || | |
Sbjct 3524452 AACGACAAGCGTGAGGTGAAGGTCGCCCAGCTATCCGGTTCGGTGGCAGAGATGTCGGCC 3524511
Query 218698 TACCATCACGGTGAGCAGAGTC--TGCAGGGTGCCATTGTAGGCATGGCACAGGACTATG 218755
||||||||||| ||| | || ||||| |||| || |||| ||| ||| ||
Sbjct 3524512 TACCATCACGGCGAG--GTCTCGTTGCAGATGACCATCGTGAATCTGGCCCAGAACTTTG 3524569
Query 218756 TGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGG 218815
||||| |||||||| || ||||| || ||||||||| ||| |||| | ||
Sbjct 3524570 TGGGCGCAAACAACATCAATCTGCTGGAGCCACGCGGTCAGTTCGGTACTCGCTTGACGG 3524629
Query 218816 GTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCC 218875
| || |||||| | || || | || || || || | |||| ||| ||||||| |
Sbjct 3524630 GCGGCAAGGATTGCGCCAGCGCTCGTTACATTTTCACCATAATGTCTCCCCTGACGCGAC 3524689
Query 218876 AGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGA 218935
| | | | ||| || ||| ||| || | || | | ||||||||| |
Sbjct 3524690 TGATCTACCATCCCTTGGACGATCCGCTGCTGGATTACCAGGTGGACGATGGCCAGAAAA 3524749
Query 218936 TTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTA 218995
| |||||| |||||| |||| || ||| | | || | || || ||| | ||||
Sbjct 3524750 TCGAGCCCTTGTGGTACTTGCCCATCATACCGATGGTCCTGATCAACGGCGCCGAGGGTA 3524809
Query 218996 TCGGGACAGG 219005
|||| || ||
Sbjct 3524810 TCGGAACTGG 3524819
>seq5277
Length=7425378
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 2207695 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2207754
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 2207755 CCCCACGTTGGGC 2207767
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 2207955 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2207896
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 2207895 CCCCACGTTGGGC 2207883
>seq5243
Length=1051599
Score = 91.5 bits (100), Expect = 3e-13
Identities = 76/92 (83%), Gaps = 1/92 (1%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1012571 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1012512
Query 142564 CCCACATCGGGCAGAAGTCGCCGTCTTTTGAT 142595
||||| | |||| ||| | | |||||| ||
Sbjct 1012511 CCCACGTTGGGC-GAAATAACTTTCTTTTTAT 1012481
Score = 91.5 bits (100), Expect = 3e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 1013195 ATGGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 1013254
Query 142561 AGCCCCACATCGGGC 142575
|||||||| | ||||
Sbjct 1013255 AGCCCCACGTTGGGC 1013269
>seq5027
Length=159368
Score = 91.5 bits (100), Expect = 3e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 98646 ATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 98587
Query 142561 AGCCCCACATCGGGC 142575
|||||||| | ||||
Sbjct 98586 AGCCCCACGTTGGGC 98572
Score = 91.5 bits (100), Expect = 3e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 100233 ATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 100292
Query 142561 AGCCCCACATCGGGC 142575
|||||||| | ||||
Sbjct 100293 AGCCCCACGTTGGGC 100307
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 101013 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 101072
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 101073 CCCCACGTTGGGC 101085
Score = 91.5 bits (100), Expect = 3e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560
|| |||||| |||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 106796 ATGGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 106737
Query 142561 AGCCCCACATCGGGC 142575
|||||||| | ||||
Sbjct 106736 AGCCCCACGTTGGGC 106722
Score = 91.5 bits (100), Expect = 3e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 113570 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 113629
Query 142563 CCCCACATCGGGC 142575
|||||| | ||||
Sbjct 113630 CCCCACGTTGGGC 113642
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 70913 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 70854
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 70853 CCCACGTTGGGC 70842
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 99211 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 99270
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 99271 CCCACGTTGGGC 99282
>seq5310
Length=763266
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 665138 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 665079
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 665078 CCCACGTTGGGC 665067
>seq5245
Length=591854
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 116815 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 116874
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 116875 CCCACGTTGGGC 116886
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
|||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 117607 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 117666
Query 142564 CCCACATCGGGC 142575
||||| | ||||
Sbjct 117667 CCCACGTTGGGC 117678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027765304635789
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |