Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq5242 98.7 2e-15 seq5074 98.7 2e-15 seq5277 91.5 3e-13 seq5243 91.5 3e-13 seq5027 91.5 3e-13 seq5310 89.7 1e-12 seq5245 89.7 1e-12 >seq5242 Length=5320397 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||||||||| | |||||| ||||| ||||| | ||||||||||| ||| ||||| || Sbjct 3387713 TCGAAGAAATTGGTCTTGCCGTCCAGCGAGATCATCTCCATGAAGTTGAACGGGTTCTTG 3387772 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| |||| | ||| | | || | | ||| || ||||||||||| | Sbjct 3387773 GTGTTGTAGATCTTGCCAACGCCCAACTCCACCAGCAAGCGATCCGCCACAAACTCAATG 3387832 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAAT 251714 ||||| |||||| ||| |||||||||| || Sbjct 3387833 TACTGGGACATCAGGTCACAGTTCATGCCGAT 3387864 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 3008422 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 3008363 Query 142112 CCCCGCCAGAGA 142123 |||||| || || Sbjct 3008362 CCCCGCAAGGGA 3008351 >seq5074 Length=4358836 Score = 98.7 bits (108), Expect = 2e-15 Identities = 317/490 (65%), Gaps = 4/490 (1%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 ||||| ||| || |||| | ||||| |||||| || ||||| ||||||||| Sbjct 3524332 GACTTTATCAACCTGGAGTTGATTCTGTTCTCGAATGCGGACAACGAGCGCTCTATTCCC 3524391 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 || |||| ||||| || ||||| ||||| ||| | | || || |||||| || Sbjct 3524392 AGTCTGGTCGATGGGCTGAAGCCCGGCCAGCGCAAGGTGATGTTCACCTGCTTCAAGAGG 3524451 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 ||| | || | |||||||| ||| | || |||| || | || || || | | Sbjct 3524452 AACGACAAGCGTGAGGTGAAGGTCGCCCAGCTATCCGGTTCGGTGGCAGAGATGTCGGCC 3524511 Query 218698 TACCATCACGGTGAGCAGAGTC--TGCAGGGTGCCATTGTAGGCATGGCACAGGACTATG 218755 ||||||||||| ||| | || ||||| |||| || |||| ||| ||| || Sbjct 3524512 TACCATCACGGCGAG--GTCTCGTTGCAGATGACCATCGTGAATCTGGCCCAGAACTTTG 3524569 Query 218756 TGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGG 218815 ||||| |||||||| || ||||| || ||||||||| ||| |||| | || Sbjct 3524570 TGGGCGCAAACAACATCAATCTGCTGGAGCCACGCGGTCAGTTCGGTACTCGCTTGACGG 3524629 Query 218816 GTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCC 218875 | || |||||| | || || | || || || || | |||| ||| ||||||| | Sbjct 3524630 GCGGCAAGGATTGCGCCAGCGCTCGTTACATTTTCACCATAATGTCTCCCCTGACGCGAC 3524689 Query 218876 AGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGTTCTTCGA 218935 | | | | ||| || ||| ||| || | || | | ||||||||| | Sbjct 3524690 TGATCTACCATCCCTTGGACGATCCGCTGCTGGATTACCAGGTGGACGATGGCCAGAAAA 3524749 Query 218936 TTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCCAATGGTA 218995 | |||||| |||||| |||| || ||| | | || | || || ||| | |||| Sbjct 3524750 TCGAGCCCTTGTGGTACTTGCCCATCATACCGATGGTCCTGATCAACGGCGCCGAGGGTA 3524809 Query 218996 TCGGGACAGG 219005 |||| || || Sbjct 3524810 TCGGAACTGG 3524819 >seq5277 Length=7425378 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2207695 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2207754 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2207755 CCCCACGTTGGGC 2207767 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2207955 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2207896 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2207895 CCCCACGTTGGGC 2207883 >seq5243 Length=1051599 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/92 (83%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1012571 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1012512 Query 142564 CCCACATCGGGCAGAAGTCGCCGTCTTTTGAT 142595 ||||| | |||| ||| | | |||||| || Sbjct 1012511 CCCACGTTGGGC-GAAATAACTTTCTTTTTAT 1012481 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 1013195 ATGGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 1013254 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 1013255 AGCCCCACGTTGGGC 1013269 >seq5027 Length=159368 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 98646 ATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 98587 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 98586 AGCCCCACGTTGGGC 98572 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 100233 ATTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 100292 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 100293 AGCCCCACGTTGGGC 100307 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 101013 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 101072 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 101073 CCCCACGTTGGGC 101085 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 106796 ATGGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 106737 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 106736 AGCCCCACGTTGGGC 106722 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 113570 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 113629 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 113630 CCCCACGTTGGGC 113642 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 70913 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 70854 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 70853 CCCACGTTGGGC 70842 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 99211 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 99270 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 99271 CCCACGTTGGGC 99282 >seq5310 Length=763266 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 665138 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 665079 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 665078 CCCACGTTGGGC 665067 >seq5245 Length=591854 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 116815 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 116874 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 116875 CCCACGTTGGGC 116886 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 117607 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 117666 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 117667 CCCACGTTGGGC 117678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027765304635789