Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq5051 87.8 4e-14 >seq5051 Length=1721511 Score = 87.8 bits (96), Expect = 4e-14 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 3343 CGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTG 3402 || |||||||| | |||| ||||| || |||||||||||||| || ||| || Sbjct 927944 CGGGTCTTTCCCAAGGTCACCAAGTGTACGTTCCACAAATACGGTCCCTCCGGCAATGTG 927885 Query 3403 GAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATT 3462 | || | ||| || || ||| | || || |||| | || ||||||||||||||| | Sbjct 927884 CAGAAGTTCGACGGTCTGTGCGTGCTGCCCCTGAACATTGTAAACGAGAAGATCTACGTG 927825 Query 3463 TTCCTCTGGTTCTGGTTC 3480 ||||| |||||||||||| Sbjct 927824 TTCCTGTGGTTCTGGTTC 927807 Score = 77.0 bits (84), Expect = 8e-11 Identities = 105/144 (73%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 2675 CCGTGAAGGGCTTAATAAAGCTTCCAACAG-TCTCCATCGACAATGTATTCTTCCGGTTG 2733 |||| |||||| | | ||| | | | ||| | | ||||||||| | || || || Sbjct 928612 CCGTCAAGGGCCTGCTGAAGAT-CGACCAGGTGTGCATCGACAACAATGTGTTTCGCATG 928554 Query 2734 CATTACCAGTTCACCGTGATCATCCTCATCGCGTTTTCATTGCTGGTGACTTCGCGGCAG 2793 |||||| || ||| ||||||||||| || || || || |||||||||| ||||| ||| Sbjct 928553 CATTACAAGGCCACGGTGATCATCCTGATTGCCTTCTCCCTGCTGGTGACCTCGCGCCAG 928494 Query 2794 TACTTCGGAAAGCTCATAGATTGC 2817 ||| |||| | | ||| |||||| Sbjct 928493 TACATCGGTGATCCCATCGATTGC 928470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479258941500