Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5214 419 4e-112 seq5242 363 3e-95 >seq5214 Length=3698012 Score = 419 bits (464), Expect = 4e-112 Identities = 1248/1899 (66%), Gaps = 82/1899 (4%) Strand=Plus/Plus Query 243735 CCACGCTGAACTGGA-CGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTC 243793 ||||| ||||||| | || || || | || | ||| || | ||| ||||||||||||||| Sbjct 3420205 CCACGGTGAACTGAATCGCGTTCG-CAGCTGGCTTTGTGCGCAGATAGTACATGCCGGTC 3420263 Query 243794 TTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTT 243853 ||||| ||| ||||| || | ||| |||| |||||| || || | Sbjct 3420264 TTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGACGTCAGTTT-----------GCCGT 3420312 Query 243854 GGGTCGTC-CTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCG 243912 | ||| | || |||| || ||||| ||||| || ||||||| ||| | | || Sbjct 3420313 AGTTCGGCTCTGCCACATGAAT--GTTGAACGACTGACTTTGGTCGATGAACGCACCACG 3420370 Query 243913 CTCTGCGGCCATGGTGATGAGGTCCTTCT--GAGATATCTCATACGCCGTCTTGTAGATG 243970 ||||||||||| | || | |||| ||||| || || ||| |||||||| | | Sbjct 3420371 ATCTGCGGCCATTTTAATTGTGGACTTCACGGAGATTTCCCACACG--GTCTTGTAAA-G 3420427 Query 243971 GGCTTGAGG-TGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTG-TGGACGATGA 244028 | || | || ||| | | || |||||||| | || ||| || |||| |||| Sbjct 3420428 ATCGCGAACCTTCTGGGGAATGGCCTCAATGTTCTGGATTGAACCCCTGCTGGAA-ATGA 3420486 Query 244029 GCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAG-CGCTCCAGCGCCTCGACCAGGTGC 244087 |||| | ||| | |||| ||||| ||| || | || |||| || | || Sbjct 3420487 TCTGGTTCTTCATATCGTCGTCCCACAAATCCAGCTCGGTTAAGTCCCTCAACAAA-TGA 3420545 Query 244088 CTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGC 244147 ||| |||||||| || || || ||||| ||||| || ||| | ||| | || Sbjct 3420546 TGGTTGACCACCTGGAATTCACCGGACAGAACGCGCCGGGTGTAAATGTTAGTTGTGTAG 3420605 Query 244148 GGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGAC 244207 ||||||| || ||||||||| ||| || || ||| || || |||||||| | Sbjct 3420606 GGCTCGAAAGATTCGTTGTTGCCCATTATTTGGGCAGTGGATGCCGTGGGCATGGGTGCA 3420665 Query 244208 ACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC--TGAGCTCGTTCCAGT 244265 |||||||| |||||| || |||||| || |||| || || | || | | ||| | Sbjct 3420666 ACCAGCAGGGAGTTCCTGACACCGTGCTGCTTGATG--GACTCCTTCAGTTTCTGCCAAT 3420723 Query 244266 CCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCT 244325 |||||| | ||| | | | || | |||||||||| ||||||| | |||| Sbjct 3420724 CCCACAGGTCCGTGGGCTTCTTGT---------CCCACATGTCGTACTGCAGAATTCCCT 3420774 Query 244326 TGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGC 244385 |||| |||||||||||||||||||| |||||||| ||| ||| ||||||| ||||| Sbjct 3420775 TGCTCACGGGGCTGCCCTCGTAGGTTTCATAGGGACCTTCGACCTGCGCCAGCTCACAGC 3420834 Query 244386 TCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT 244445 | | || | |||| ||||||| ||||| ||||| ||| || |||| | ||| | Sbjct 3420835 TGGCTTCCAAGGCGCCGTAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTT 3420894 Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 ||| | | |||| | ||| | || | | |||| || | ||||| || |||| Sbjct 3420895 CCTCGCTTTCGTATGGGAATCGCATGAGAATCAGGGCGTCAGCGAAACCCTGGACACCGA 3420954 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 |||| | || | || | | || || | | | || |||| ||| ||||||||| Sbjct 3420955 TGCCCACCGGACGATGCCTCAAATTAGATTTCTTTGTCTCTGGCAGGGGATAAAAGTTGA 3421014 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAA 244625 ||| || | ||||||||| || | ||| | | | | ||| || ||| | | Sbjct 3421015 TGTCAATTATCTTGTTGAGATTTCTGGTAACCGTCTTGGTGACTTCCTTCAGTTTTTTGA 3421074 Query 244626 AGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGC 244685 | || ||| | | ||||| || || ||| ||||||||| | | Sbjct 3421075 AATCATAC------GTCTTCTCGGGCGTG---------ACGAACATGTTGAGGGCAATGG 3421119 Query 244686 TGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 ||||||||||| || || | ||| |||| || |||| || || |||||||| | Sbjct 3421120 ATGCCAGGTTGCACACTGCAATCTCGTCCGGCGCGGAATACTCAACGATTTCGGTGCACA 3421179 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 || ||||||||||||||||| | | ||| || ||| ||| |||||| | |||| Sbjct 3421180 AATTGCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCCTGTTGCACGAATCCT 3421239 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 || | |||||| | || ||||| || | ||| | | | || | | ||| | | Sbjct 3421240 TGAACAGCATGTACGGATTGCCGGTTTCCACCTGCGACTCAATGATGGCGAACCACAAGG 3421299 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 | ||||||||||||| | || |||||| |||||| | |||||||| | Sbjct 3421300 ACTGTGCCTTGACCGTCCGGTTCGCACGGCCCTCCTGCTCGTATTGCGTGTACAGCTTTT 3421359 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 ||||||| |||||| || |||| ||||||||||| ||| ||||| || || Sbjct 3421360 CGAACTCATCGCCCCACACATCGTGCAGGCCGGGGCATTTGTGCGGACACATCAGCGACC 3421419 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || ||| | ||| ||| | | |||||| || ||||| ||||||||||| | ||||| Sbjct 3421420 AGTCCCCGTTGGCCTCGACGCGTTTCATGAAAAGATCGGGTATCCAGAGGGCGTAGAAGA 3421479 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 | || | || | | ||| ||| ||| ||||||||| | || |||| || || || | Sbjct 3421480 GATCGCGGGCGCGATTCTCCTCCTTGCCGGTGTTCTTCTTGAGTTCCAGGAACTCGAACA 3421539 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 |||| |||||||||||||| ||| | |||| ||| |||||||||||| ||| |||| Sbjct 3421540 CGTCCGAGTGCCAGGGCTCCAGGTAAATGGCGAAGGCACCGGGCCGCTTGCCGCCACCCT 3421599 Query 245166 GGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGT 245225 | ||||| | | | |||||||| | || | || || | ||| || ||| Sbjct 3421600 GATCCACGTAACGTGCCACATTGTTGAAGACCCTGAGCATGGGTACCAGGCCATTGGAGG 3421659 Query 245226 GGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTA 245285 ||| || ||||| |||| ||| ||||||| ||| || ||| |||||||| | | Sbjct 3421660 TGCCATTCGTGCCGCAGATGGAGGTGCCCTTGGCCC---GGATGC-AATGGACATTC--A 3421713 Query 245286 GTCC---GCCGGCGTGC----TTGGAGATGAGGGCGCAGCTCTT-GATGGTGTCTGCTAT 245337 |||| ||| | ||| || ||||| | |||||| || || | | | || Sbjct 3421714 GTCCAATGCC-TCCTGCCGATTTCGAGATCATGGCGCA-CTGTTCCACCGACTTGAAGAT 3421771 Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGC----T 245393 |||||| || ||| | | ||||| | ||||| ||||| || ||||| || ||| | Sbjct 3421772 GCCCTCGATCGAGTCGGCCGTCATGGTCAGCAGGAAGCACGACGACAGTTGCGGCCGATT 3421831 Query 245394 TGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGAGGA 245453 || |||||| | || || || || ||||||||| ||| | || ||| || | Sbjct 3421832 TGTGGCTGC----GGCAAAAAGCGTTGGCGAGGCGTGGGTGAAGAACCGCTCCGACAGCA 3421887 Query 245454 ACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CTC 245512 ||| |||| | || ||||||| || || ||||| | || ||| | | Sbjct 3421888 GGTTGTAGGTCTCCACGGCCGCATCGATGTCCTCTCCATGGATTCCGATCGC-CACGCGC 3421946 Query 245513 ATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT-CGGGTCCCTTGAGCATGTAGGAGCG 245571 || || ||||||| || |||| | || | || || ||| |||| ||| || || Sbjct 3421947 ATCAGCATGTGCTGCGGACGCTCG-GCGATCTTTCCGTTTCTCTTCAGCAGGTACGAACG 3422005 Query 245572 CTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTC 245610 ||||| || || || |||||||| ||| |||||||| Sbjct 3422006 TTCGAGGGTTTTAAAACCAAAGTAGTTGTACCCAAAGTC 3422044 >seq5242 Length=5320397 Score = 363 bits (402), Expect = 3e-95 Identities = 579/819 (71%), Gaps = 19/819 (2%) Strand=Plus/Minus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||||| |||||| | || ||| |||||||| | ||| |||| ||| | || | Sbjct 3388498 CTGGACCGTAGAGGAGGTGGATCTGTCCAAGGACCTGACCGACTGG----CACCGCCTCA 3388443 Query 42395 -GAACGAAAAGTTT---TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCA 42450 | |||| || | ||| || || | ||||||||||| |||||||| || |||| Sbjct 3388442 AGGACGACGAGCGTCACTTCATCTCGCACGTGCTGGCCTTCTTTGCCGCCTCCGATGGCA 3388383 Query 42451 TAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCT 42510 | |||||||||||||||| |||||| | ||||||||| | ||||| |||| Sbjct 3388382 TCGTCAATGAGAACCTGGTGGAGCGGTTCAGCCAGGAGGTGCAGATCACGGAGGCCCGCT 3388323 Query 42511 GCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC 42570 ||||||||||||||||||| ||||| |||||||||||||| ||| ||||| | ||| Sbjct 3388322 GCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACAGCGTGCTGA 3388263 Query 42571 TCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGA 42630 || |||| ||||||| |||||| | |||| | |||||||| ||||| ||||||| Sbjct 3388262 TCGACACTTACATCCGGGATCCGCACCAGCGGGAGTACCTGTTCAACGCCATCGAGACGA 3388203 Query 42631 TGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCC-CGAC-GC 42688 |||| | ||| ||||| |||||||| || ||||||| ||| | | || Sbjct 3388202 TGCCGGCGGTGAAGCGCAAGGCTGACTGGGCTCTGTCCTGGATC--TCCTCCAAGTCGGC 3388145 Query 42689 AACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGC 42748 | ||||| ||| | | | || ||| ||||||| ||||||||||||||| ||| Sbjct 3388144 CAATTTCGGGGAGCGCATCATCGCATTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAG 3388085 Query 42749 CTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGA 42807 |||||||||||| |||||||| ||| || ||| | |||||| ||||| |||||||| | Sbjct 3388084 CTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCT-GATGCCGGGACTGACCTTCTCCA 3388026 Query 42808 ACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGA 42867 |||| || ||| | | |||||||| |||| | ||||| ||| || ||||| | Sbjct 3388025 ACGAGCTGATCTCCCGCGACGAGGGATTGCACTGTGACTTCGCCGTGCTGATGTTCCAG- 3387967 Query 42868 GCCACCTCAGGCACAAGCCCTCGAAG-GAGCGGGTCCGGGCCATCATCACGGAGGCCGTG 42926 ||||| ||| | || || | ||||| || | |||||| || || ||| Sbjct 3387966 --CACCTGGTGCA-GCGACCCAGACGCGAGCGCATCATCGAGATCATCCGCGATGCGGTG 3387910 Query 42927 GAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCAC 42986 || ||| ||||||||||||| | | ||||| ||| ||| ||||||||||| Sbjct 3387909 CTCATTGAGCAGGAGTTCCTCACAGACGCCCTGCCTGTGAACCTCATCGGCATGAACTGT 3387850 Query 42987 GACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTC 43046 ||||| |||| | ||||||| ||| || || || | | ||| || |||| | Sbjct 3387849 GACCTGATGTCCCAGTACATTGAGTTTGTGGCGGATCGCTTGCTGGTGGAGTTGGGCGTT 3387790 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 || |||||||||| | ||| ||| |||| ||||||| |||||| |||| ||| Sbjct 3387789 GGCAAGATCTACAACACCAAGAACCCGTTCAACTTCATGGAGATGATCTCGCTGGACGGC 3387730 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||| || ||||||||| || | ||| |||||| Sbjct 3387729 AAGACCAATTTCTTCGAGAAGAAGGTGGGCGAGTACCAG 3387691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944275114781040