Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq5375 145 6e-30 seq1831 104 2e-17 seq1808 95.1 1e-14 seq4488 84.2 2e-11 seq5277 82.4 6e-11 >seq5375 Length=646746 Score = 145 bits (160), Expect = 6e-30 Identities = 191/261 (73%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 37840 TGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATATGCGCA 37899 |||||||| |||| ||| | ||||| ||||||||||| |||||||| | |||||| Sbjct 627727 TGTGGAACTCGGCGCAACTGCAGCTGGTGCGCGAGGGCAAGATGCACGGCTTCTTGCGCA 627786 Query 37900 TGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACC--GCGCTCAACTA 37957 |||| ||| ||| || ||| | |||||| | | | || | || | ||||| | || Sbjct 627787 TGTACTGGGCCAAAAAGATTCTCGAATGGACCGCC-ACGC-CGGAACTGGCGCTGGAGTA 627844 Query 37958 CGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACGTCGG 38017 ||| || || || || ||||||||| | || || || ||||||||||| ||||| || Sbjct 627845 CGCGATCCTGCTAAACGACAAGTACAGCCTTGATGGACGCGATCCCAACGGCTACGTGGG 627904 Query 38018 CTGTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGATTCCCATTTACGG 38077 ||| ||||||| || |||| | ||||||| | ||| ||| |||||| ||| Sbjct 627905 CTGCATGTGGTCCATCGGCGGCGTCCACGATATGGGATGGAAGGAGCGCGCCATTTTCGG 627964 Query 38078 CAAGATTCGGTACATGAACTA 38098 |||| |||||||||||||||| Sbjct 627965 CAAGGTTCGGTACATGAACTA 627985 >seq1831 Length=1301 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 306 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 247 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 246 ATAACTGATATAATGAGCCTTTTGCGGTTTC 216 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 306 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 247 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 246 ATAACTGATATAATGAGCCTTTTGCGGTTTC 216 >seq1808 Length=1186 Score = 95.1 bits (104), Expect = 1e-14 Identities = 68/76 (89%), Gaps = 2/76 (3%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 1111 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 1170 Query 114392 AAAACTGATATATTGA 114407 | |||||||||| ||| Sbjct 1171 ATAACTGATATAATGA 1186 Score = 95.1 bits (104), Expect = 1e-14 Identities = 68/76 (89%), Gaps = 2/76 (3%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 1111 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 1170 Query 115589 AAAACTGATATATTGA 115604 | |||||||||| ||| Sbjct 1171 ATAACTGATATAATGA 1186 >seq4488 Length=533506 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || ||||||||||| || || ||||||||| |||||||| || | | Sbjct 135531 CCACCGCGCAGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 135472 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| ||||||||||| || ||||| ||||||||||| || Sbjct 135471 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 135412 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || ||| |||||| ||| || ||| | ||| | | || | || || Sbjct 135411 ATGCCCTCCTTGTCCTGAATCTTAGCCTTCA-CATTCTCGATGGTGTCGGAAGGCTCCAC 135353 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || ||||| || |||||||||||||| ||||| Sbjct 135352 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305 >seq5277 Length=7425378 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || |||| ||||| ||| || ||||||||||||||||| | || || || Sbjct 1193001 AGACGGAGAACCAAGTGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGA-AAGAGTACG 1192943 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || || | |||||||||||||| ||||| ||||||||||| || | || ||| Sbjct 1192942 GCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTC 1192883 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCATTCGACCG 34087 |||||| ||| || ||| | |||| | |||| | || ||| || | | Sbjct 1192882 CTTGTCCTGAATCTTGGCCTTCA-CATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAG 1192824 Query 34088 TTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 | || || || || || | || ||||||||||| |||||||| Sbjct 1192823 TAATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 1192781 Score = 82.4 bits (90), Expect = 6e-11 Identities = 88/114 (77%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || ||||||| ||||| || |||||||| ||||||||||| | | Sbjct 1194378 CCTCCGCGTAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGAC 1194319 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | | || || |||| ||||| |||||||||||||| |||| |||||||| || Sbjct 1194318 AGAGTG-CGTCCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTC 1194266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397036127994058