Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5214 140 8e-28 seq5277 136 9e-27 seq4172 132 1e-25 seq4488 100 7e-16 >seq5214 Length=3698012 Score = 140 bits (154), Expect = 8e-28 Identities = 155/204 (76%), Gaps = 7/204 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||| | ||| ||||| || ||||| | || || || |||||| Sbjct 3523158 TCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAG 3523099 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| ||| ||||| ||||||||||| ||||| || || ||||| || Sbjct 3523098 ATCAGACGCTGCTGA---TCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTAACA 3523042 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| ||| || ||| || || || ||||| ||||| || || || ||||| Sbjct 3523041 TTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTA 3522982 Query 288460 ACGAATATCTGCATTATGTTATTC 288483 ||||| |||||||| || ||||| Sbjct 3522981 ACGAAGATCTGCATCTTG-TATTC 3522959 >seq5277 Length=7425378 Score = 136 bits (150), Expect = 9e-27 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | |||| || || || ||||| || ||||||| Sbjct 1193466 CCACCTCGCAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAA 1193407 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| || ||||| || ||||||||||||||||| |||||||| || |||| Sbjct 1193406 AGAGTGCGACCATCTTCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTG---ATCTGGA 1193350 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || || ||||| ||||| || |||||||| || || | ||| | ||| Sbjct 1193349 GGAATTCCCTCCTTGTCCTGAATTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCA 1193290 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| || || ||||| || ||||| ||||| || ||||| Sbjct 1193289 ACCTCCAGAGTGATGGTTTTACCGGTAAGGGTCTTTACGAAGATTTGCAT 1193240 Score = 107 bits (118), Expect = 5e-18 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| ||||| || | || || | |||| || ||| || ||||| || || |||| Sbjct 1194379 TCCTCCGCGTAGACGGAGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGA 1194320 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||||||||| || || || || || || ||||||| |||||| || ||||| Sbjct 1194319 CAGAGTGCGTCCGTCCTCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGG---TCTGG 1194263 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | ||||| || || ||||||||||| || ||||| || || || | || | || Sbjct 1194262 GGGAATTCCCTCCTTGTCCTGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTC 1194203 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || ||||| || || || ||||| ||||| || ||||| Sbjct 1194202 CACCTCCAGTGTAATGGTCTTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152 >seq4172 Length=1033301 Score = 132 bits (146), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | ||| | ||| || || ||||| || ||||||| Sbjct 906740 CCACCACGCAGACGCAGGACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 906799 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| || || | || ||||| |||||||||| |||||| ||| |||||| Sbjct 906800 AGAGTGCGTCCATCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGA---TCTGGG 906856 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 |||||||| || |||||||| || || ||||| || || || | |||| | || Sbjct 906857 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAGGCTCG 906916 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| || || ||||||||||| || |||||||| Sbjct 906917 ACCTCCAAAGTGATGGTCTTGCCTGTGAGAGTCTTGACAAAGATCTGCAT 906966 Score = 129 bits (142), Expect = 1e-24 Identities = 171/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||| | || || | ||| | ||| || || ||||| ||||| | Sbjct 907192 CATG-CCTCCACGGAGACGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATGTTATAAT 907250 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | || ||||| ||||| | || ||||| |||||||||| |||||| ||| | Sbjct 907251 CGGACAAGGTACGTCCATCTTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGA---T 907307 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 ||||| ||||| || || |||||||| || || ||||| || || || | |||| | Sbjct 907308 CTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCGGAAG 907367 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| ||||| || ||||||||||| ||||| |||||||| Sbjct 907368 GCTCAACCTCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 907422 >seq4488 Length=533506 Score = 100 bits (110), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || ||||| | || || || ||||| || ||||| | Sbjct 135531 CCACCGCGCAGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 135472 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || ||||||||||||||||| || ||||||| Sbjct 135471 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG---ATCTGGG 135415 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||| || || || ||||| || || || | ||| | || Sbjct 135414 GGAATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCC 135355 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| ||||| || || || || || |||||||| Sbjct 135354 ACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179572344345862