Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq5242 159 4e-34 seq4086 118 1e-21 seq4085 118 1e-21 seq5074 104 3e-17 seq5078 98.7 1e-15 >seq5242 Length=5320397 Score = 159 bits (176), Expect = 4e-34 Identities = 292/420 (70%), Gaps = 6/420 (1%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| || || ||| |||||||||||| || ||||| ||||||| ||| ||||||| Sbjct 3387694 GTACTCGCCCACCTTCTTCTCGAAGAAATTGGTCTTGCCGTCCAGCGAGATCATCTCCAT 3387753 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 125876 || | || |||||||| | ||| | || ||| || | || | || || | | Sbjct 3387754 GAAGTTGAACGGGTTCTTGGTGTTGTAGATC-TTGCCAACGCCCAACTCCACCAGCAAGC 3387812 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT-A 125935 |||||| || |||||||||||| |||||| ||| ||||||| ||||||||||| | Sbjct 3387813 GATCCGCCACAAACTCAATGTACTGGGACATCAGGTCACAGTTCATGCCGATGAGGTTCA 3387872 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 || || || ||||| || |||| ||| |||||| ||| || || || | ||| || Sbjct 3387873 CA-GGCAGGGCGTCTGTGAGGAACTCCTGCTCAATGAGCACCGCATCGCGGATGATCTCG 3387931 Query 125996 TGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTC 126054 ||| || | |||| ||| | | || || ||| | |||||| || || Sbjct 3387932 ATGATGCGCTCGCGTCTGGGTC-GCTGCACCAGGTGCTGGAACATCAGCACGGCGAAGTC 3387990 Query 126055 TTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAG 126114 ||| | |||||||| |||||||| || || || |||||| |||||| ||||| || Sbjct 3387991 ACAGTGCAATCCCTCGTCGCGGGAGATCAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAG 3388050 Query 126115 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCAC 126174 ||| |||||||||| ||||||||| | || || ||||||||| |||||||| Sbjct 3388051 ACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCAC 3388110 >seq4086 Length=80244 Score = 118 bits (130), Expect = 1e-21 Identities = 258/377 (68%), Gaps = 16/377 (4%) Strand=Plus/Minus Query 10783 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 10842 || ||||||||| || || || || || || || ||| | | ||| ||||| || Sbjct 8884 CTGACGATCAAACCGGCCGGGACGCAGCAGAGCCGGGTCCAACACGTCAGGACGGTTGGT 8825 Query 10843 CGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAG 10899 ||||| || | || | ||| |||||| |||||||| ||||| ||| || | Sbjct 8824 GGCCGCAATCAGAATAACGCCT---TCGTTACTTTCAAAGCCGTCCATTTCAACCAGCAT 8768 Query 10900 TTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTG 10956 || |||| || |||||||||||||| || ||| | | || ||| || ||| | | | Sbjct 8767 CTGGTTGAGTGTCTGTTCGCGTTCATCGTTACCGCCGCCCATGCCAGCCCCACGGTGGCG 8708 Query 10957 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGAT-TTTCACGGGCAA 11015 || |||||||||||||| || ||||| | || |||||| | |||| | | Sbjct 8707 G---CCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTTTCTTGCCCTG 8651 Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075 || | || || || || || | ||||| ||||| || |||||||||||||| | | Sbjct 8650 CT-CGAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAG 8592 Query 11076 CGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGG 11134 | ||||| || | || ||| || || |||| ||||||||| || || || || || || Sbjct 8591 AGCCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGC 8533 Query 11135 GTCTTCCCCGTCCCAGG 11151 ||||| || || || || Sbjct 8532 GTCTTACCTGTGCCCGG 8516 >seq4085 Length=47143 Score = 118 bits (130), Expect = 1e-21 Identities = 258/377 (68%), Gaps = 16/377 (4%) Strand=Plus/Minus Query 10783 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 10842 || ||||||||| || || || || || || || ||| | | ||| ||||| || Sbjct 25342 CTGACGATCAAACCGGCCGGGACGCAGCAGAGCCGGGTCCAACACGTCAGGACGGTTGGT 25283 Query 10843 CGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAG 10899 ||||| || | || | ||| |||||| |||||||| ||||| ||| || | Sbjct 25282 GGCCGCAATCAGAATAACGCCT---TCGTTACTTTCAAAGCCGTCCATTTCAACCAGCAT 25226 Query 10900 TTGATTGATGGTTTGTTCGCGTTCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTG 10956 || |||| || |||||||||||||| || ||| | | || ||| || ||| | | | Sbjct 25225 CTGGTTGAGTGTCTGTTCGCGTTCATCGTTACCGCCGCCCATGCCAGCCCCACGGTGGCG 25166 Query 10957 CTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGAT-TTTCACGGGCAA 11015 || |||||||||||||| || ||||| | || |||||| | |||| | | Sbjct 25165 G---CCTACGGCGTCAATTTCGTCAATGAAGATAATGCACGGTGCAGCTTTCTTGCCCTG 25109 Query 11016 CTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGG 11075 || | || || || || || | ||||| ||||| || |||||||||||||| | | Sbjct 25108 CT-CGAACATGTCACGCACGCGGGAAGCACCCACACCTACGAACATTTCCACAAAGTCAG 25050 Query 11076 CGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGG 11134 | ||||| || | || ||| || || |||| ||||||||| || || || || || || Sbjct 25049 AGCCGGAA-ATGGTGAAGAACGGCACATTGGCTTCACCCGCAATAGCGCGCGCCAGCAGC 24991 Query 11135 GTCTTCCCCGTCCCAGG 11151 ||||| || || || || Sbjct 24990 GTCTTACCTGTGCCCGG 24974 >seq5074 Length=4358836 Score = 104 bits (114), Expect = 3e-17 Identities = 172/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 171907 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGATATT 171966 ||| ||||| ||| | | || || || || ||||| | || || || |||||||| || Sbjct 3524640 ATCCTTGCCGCCCGTCAAGCGAGTACCGAACTGACCGCGTGGCTCCAGCAGATTGATGTT 3524581 Query 171967 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 172025 ||||| |||| ||| | ||||| || || || || ||| || | | |||| || | Sbjct 3524580 GTTTGCGCCCACAAAGTTCTGGGCCAGATTCACGATGGTCATCTGCAACG-AGACCTCGC 3524522 Query 172026 CGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCTCAT 172085 ||||||||||||||||| | || || || | | | | ||| || ||||||| |||| Sbjct 3524521 CGTGATGGTAGGCCGACATCTCTGCCACCGAACCGGATAGCTGGGCGACCTTCACCTCAC 3524462 Query 172086 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 172145 |||| |||| | | |||||| | |||| ||||| | ||| ||||| || || | Sbjct 3524461 GCTTGTCGTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGGCCGGGCTTCAGCCCAT 3524402 Query 172146 CGGCCA 172151 || ||| Sbjct 3524401 CGACCA 3524396 >seq5078 Length=1488007 Score = 98.7 bits (108), Expect = 1e-15 Identities = 251/374 (67%), Gaps = 10/374 (3%) Strand=Plus/Minus Query 10783 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 10842 || ||| || || ||||| ||||| || | || |||||| | ||| ||||| || Sbjct 1429850 CTGACGGTCGAAACGACCGGGGCGCAGCAATGCCGGGTCAAGCACATCTGGACGGTTGGT 1429791 Query 10843 CGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTG 10902 || || || | | | ||| | | | ||||| |||||||||||| || | || Sbjct 1429790 GGCGGCAATCAGGATCACGCCTTCATTGCTTTCAAAACCATCCATCTCAACCAGCATCTG 1429731 Query 10903 ATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATAC-CACCCGCACTGCGTTGCTTAC 10961 || | || || ||||| |||||||| || | || | ||| |||| || || || Sbjct 1429730 GTTCAGTGTCTGCTCGCGCTCATCATT-GCCGCCACCCATACCTGCACCACGATGGCGAC 1429672 Query 10962 CGACGGCGTCAATTTCATCGATGAAAACGATACACG--GTTGA-TTTTCACGGGCAACTT 11018 | ||||| ||||||||||| ||||| | || || | | ||| |||| || | || Sbjct 1429671 CAACGGCATCAATTTCATCAATGAAGATAATGCAAGGAGCTGATTTTTTAC---CCTGTT 1429615 Query 11019 CAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGG 11078 | || || || || || | ||||| ||||| || |||||||||||||| | || Sbjct 1429614 CGAACATGTCACGCACACGGGATGCACCAACACCTACGAACATTTCCACAAAGTCGGAAC 1429555 Query 11079 CGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTC 11137 | | | || | | ||| || || |||| |||||| || ||||| ||||| | ||||| Sbjct 1429554 CAG-AGATGGTAAAGAACGGTACATTGGCTTCACCTGCAATGGCGCGGGCCAACAGGGTT 1429496 Query 11138 TTCCCCGTCCCAGG 11151 || || || || || Sbjct 1429495 TTACCAGTGCCCGG 1429482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597313062091320