Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5277 125 7e-24 seq5214 122 9e-23 seq4172 120 3e-22 seq4488 107 2e-18 seq4594 96.9 3e-15 >seq5277 Length=7425378 Score = 125 bits (138), Expect = 7e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||| |||||||||||||| | | || || | |||||||||||| Sbjct 1192986 TGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCCATCTTCAAGCTGC 1192927 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||||||| | || || |||||||| || || ||||| || || || || || || || Sbjct 1192926 TTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTG 1192867 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | ||||| | || || || | ||| | ||||||||| ||| Sbjct 1192866 GCCTTCACATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAGTAATGGTCTTGCCAGTC 1192807 Query 64421 AAAGTTTTTACGAAAATTTGCATTTTAAT 64449 || || || || || || |||||||| || Sbjct 1192806 AAGGTCTTCACAAAGATCTGCATTTTGAT 1192778 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | |||| |||||||| || || ||||||||||| | | ||||| |||| Sbjct 1194363 AGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCC 1194304 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||||||||||| | || | ||||||||||| || |||||||| || || || Sbjct 1194303 TCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 1194244 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| ||| | || ||| | ||||| || | || | |||| Sbjct 1194243 TGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCACCTCCAGTGTAATGGTC 1194184 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || ||||| |||||||| Sbjct 1194183 TTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| |||||||| ||||| |||||||| || | | ||| || | || ||||||||| Sbjct 1193670 TGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGATAGGGTTCGTCCATCCTCAAGCTGC 1193611 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||||||| |||| | |||||||| || || ||||| || || || || || || || Sbjct 1193610 TTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTG 1193551 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | |||||| | || || || | ||| | ||| || ||||| Sbjct 1193550 GCCTTCACATTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTTCCGGTT 1193491 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 || || || ||||| |||||||| Sbjct 1193490 AAGGTCTTCACGAAGATTTGCAT 1193468 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||| || | |||| || || || || || |||||||| || | Sbjct 1193467 ACCACCTCGCAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 1193408 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | ||||| | ||| || || || | ||||| |||||||| || ||||| Sbjct 1193407 AAGAGTGCGACCATCTTCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGG 1193348 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||| || || || || ||||| ||| || ||| | |||||| | || || Sbjct 1193347 AATTCCCTCCTTGTCCTGAATTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAAC 1193288 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | ||| || ||||| | || |||||||| |||||||| Sbjct 1193287 CTCCAGAGTGATGGTTTTACCGGTAAGGGTCTTTACGAAGATTTGCAT 1193240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || ||||||||||| | | || || | || || || ||||| || Sbjct 1193208 GTCGACTCCTTCTGGATGTTGTAATCCGACAACGTACGGCCATCCTCCAGTTGCTTACCA 1193149 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| ||||||| |||||||| || || || || ||||| || || || || || ||| Sbjct 1193148 GCAAAAATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTC 1193089 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | |||||| | || || || | ||| | ||||||||| |||| || Sbjct 1193088 ACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTCTTGCCCGTCAGGGTC 1193029 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 1193028 TTCACGAAGATCTGCAT 1193012 >seq5214 Length=3698012 Score = 122 bits (134), Expect = 9e-23 Identities = 539/840 (64%), Gaps = 20/840 (2%) Strand=Plus/Plus Query 153672 TTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCG 153731 || |||||||| || || || | ||| || || || || |||| ||| ||||||||| Sbjct 3420201 TTATCCACGGTGAACTGAATCGCGTTCGCAGCTGGCTTTGTGCGCAGATAGTACATGCCG 3420260 Query 153732 GTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGC 153791 || || | ||| |||||| | || | ||| | | || | | || | | ||| Sbjct 3420261 GTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGACGTCAGTTTGCCGTAGTTCGGC 3420320 Query 153792 TGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCC 153851 | || | | | ||| |||||||| || || |||||||| || || ||||| || ||| Sbjct 3420321 TCTGCCACATGAATGTTGAACGACTGACTTTGGTCGATGAACGCACCACGATCTGCGGCC 3420380 Query 153852 ATGTCAATCAAGTTTTTACTGCTC----ATTTCCCACACAGTTTTGTAGACGGCTTTAAT 153907 || | ||| | | ||| | | ||||||||||| || ||||| | | || Sbjct 3420381 ATTTTAAT----TGTGGACTTCACGGAGATTTCCCACACGGTCTTGTAAAGATCGCGAAC 3420436 Query 153908 GTCGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCG 153967 | | ||| ||| ||||| ||||| | || | | | || || || Sbjct 3420437 CTTCTGGGGAATGGCCTCAATGTTCTGGATTGAACCCCTGCTGGAAATGATCTGGTTCTT 3420496 Query 153968 CATGTGGTCGTCGTACAAATTTAG-TCGACATAAATCT-TCAACCAAGTGCTGGTTAATT 154025 ||| | |||||| |||||| || ||| ||| || ||||| || || ||||| | Sbjct 3420497 CATATCGTCGTCCCACAAATCCAGCTCGGT-TAAGTCCCTCAACAAA-TGATGGTTGACC 3420554 Query 154026 ACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAAC 154085 || || || || |||| || ||||| || || | || | ||| | |||||||| Sbjct 3420555 ACCTGGAATTCACCGGACAGAACGCGCCGGGTGTAAATGTTAGTTGTGTAGGGCTCGAAA 3420614 Query 154086 GATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAA 154145 |||||||||||||| | |||||| || || | ||| |||||||| || |||| || Sbjct 3420615 GATTCGTTGTTGCCCATTATTTGGGCAGTGGATGCCGTGGGCATGGGTGCAACCAGCAGG 3420674 Query 154146 GAGTTTCGCAAACCGTGTT--TTGCAATGCGCAATTTTA-AATCTGCCCAATTCCACAAG 154202 ||||| | | |||||| | ||| ||| | || | |||| ||||| ||||| | Sbjct 3420675 GAGTTCCTGACACCGTGCTGCTTG--ATGGACTCCTTCAGTTTCTG-CCAATCCCACAGG 3420731 Query 154203 TTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCA 154262 | || || | | || |||||||||||| |||| || ||| ||| | || ||| | Sbjct 3420732 TCCGTGGGCTTCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCC 3420791 Query 154263 CTATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCA 154322 || | || || || | | | |||| || || |||||||| || || | Sbjct 3420792 TCGTAGGTTTCATAGGGACCTTCGACCTGCGCCAGCTCACAGCTGGCTTCCAAGGCGCCG 3420851 Query 154323 TAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGC 154382 ||||| | ||||||| || || | || || | ||||| || |||||||| || Sbjct 3420852 TAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCCTCGCTTTCGTATGGG 3420911 Query 154383 AATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGT 154442 |||| || | | | || || |||| || || | || | || || || | || Sbjct 3420912 AATCGCATGAGAATCAGGGCGTCAGCGAAACCCTGGACACCGATGCCCACCGGACGATGC 3420971 Query 154443 TTTAAATTCGA-TTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATT 154501 | ||||| || ||||||| | | ||| |||||| | ||||| || || || || || Sbjct 3420972 CTCAAATTAGATTTCTTTGTC-TCTGGCAGGGGATAAAAGTTGATGTCAATTATCTTGTT 3421030 Score = 113 bits (124), Expect = 5e-20 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| | || | || || || || |||||||| || || | Sbjct 3523195 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 3523136 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | ||||| ||||||||||| || | || || |||||||| || ||||| Sbjct 3523135 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 3523076 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCG--TC 64392 |||||||||||| || || | | || ||||| ||| || | |||| ||| || || Sbjct 3523075 AATTCCTTCTTTGTCCTG-AATCTTGGCTTTAACATTTTCGATAGTAT--CCGACGGTTC 3523019 Query 64393 CACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || | ||| | ||||||||| || | || || ||||| || ||||| || Sbjct 3523018 GACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 3522965 >seq4172 Length=1033301 Score = 120 bits (132), Expect = 3e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| |||||||| || || ||||| ||||| | | || || |||| || |||||| Sbjct 907448 TGAAGGGTCGATTCCTTCTGGATGTTATAATCGGACAAAGTACGTCCGTCCTCCAGCTGC 907507 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| |||| | |||||||| || || |||||||| || || || || || || Sbjct 907508 TTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTG 907567 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | ||||| | || || || | ||| | ||||||||| ||| Sbjct 907568 GCCTTCACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTC 907627 Query 64421 AAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| || |||||||||||||| || Sbjct 907628 AAAGTCTTCACGAAAATTTGCATATT 907653 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| |||||||| || | | ||||| | || || |||||||| ||| Sbjct 906998 GTGGACTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTTCCG 907057 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | |||||||| || || || ||||| || || || || || || ||| Sbjct 907058 GCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC 907117 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | ||||| | || || || | ||| | |||||||||||||||||| Sbjct 907118 ACGTTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTC 907177 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 907178 TTAACGAAGATCTGCAT 907194 >seq4488 Length=533506 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| ||||| | ||||| || || || |||||||| || | Sbjct 135531 CCACCGCGCAGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 135472 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || |||||||||||||| | || || |||||||| || || ||| Sbjct 135471 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 135412 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| ||| ||| | || || | ||||| Sbjct 135411 ATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACC 135352 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||| | ||||| || || || ||||| Sbjct 135351 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305 >seq4594 Length=2557182 Score = 96.9 bits (106), Expect = 3e-15 Identities = 224/336 (67%), Gaps = 9/336 (3%) Strand=Plus/Minus Query 115361 GGACTGCACGGTTTTCATGTTCACGAATTCGGCGACACTAGCAACGGCTGCACGTCCGCC 115420 || |||||||| || ||||| ||||| ||||| |||| | ||||||||||| ||| | Sbjct 2006700 GGTCTGCACGGATTCCATGTGCACGAGTTCGGGGACAACACCAACGGCTGCATGTCATCG 2006641 Query 115421 GGCGAGCATTTCAACCCGTTTAACCAAGATCACGGCGCACCGAACGCACCCGTCCGCCAC 115480 || ||||||||| || | | | || || ||||| || || | ||||||| Sbjct 2006640 GGGCCGCATTTCAATCCCTACGGCAAGGAGCATGGCGCCCCCGCCGACGAGGACCGCCAC 2006581 Query 115481 GTCGGTGATCTGGGCAACGTCGAATCTGCGGGCTTCAACTCGCTCACCGACGTCAACATG 115540 | || |||||||||||| | || | | || | ||| | ||| | |||||||| Sbjct 2006580 CTGGGCGATCTGGGCAACATTGAGGCCACTGG---CGACTGCCCCACGAAGGTCAACATC 2006524 Query 115541 ACGAGCGACT---TAATGACGTTGTACGGCCCGAACAGTGTGCTCGGCCGCAGCTTAGTG 115597 | ||||| || ||| ||| |||| | |||| | |||| |||| | | ||| Sbjct 2006523 TC---CGACTCGAGGATCACGCTGTTCGGCGCCGACAGCATCATCGGACGCACCGTGGTG 2006467 Query 115598 GTGCACGCGGACCGCGACGATCTCGGCCTTACCGATCATCCGCTAAGCAAAACCACGGGT 115657 || ||||| || ||| ||||||||| | || ||| ||||| ||||||| Sbjct 2006466 GTCCACGCCGATGCCGATGATCTCGGCAAGGGTGGCCACGAGCTGAGCAAGTCCACGGGC 2006407 Query 115658 AACTCGGGCGGGCGCCTGGCCTGCGGCATCATCGGC 115693 ||| | || | ||| | | |||||| |||| ||| Sbjct 2006406 AACGCCGGTGCTCGCATTGGATGCGGCGTCATTGGC 2006371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499610892854760