Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq5277 125 7e-24
seq5214 122 9e-23
seq4172 120 3e-22
seq4488 107 2e-18
seq4594 96.9 3e-15
>seq5277
Length=7425378
Score = 125 bits (138), Expect = 7e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| || |||||||| |||||||||||||| | | || || | ||||||||||||
Sbjct 1192986 TGAAGGGTGGATTCTTTCTGAATGTTGTAATCGGAAAGAGTACGGCCATCTTCAAGCTGC 1192927
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
||||||||| | || || |||||||| || || ||||| || || || || || || ||
Sbjct 1192926 TTGCCGGCAAAGATCAGTCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTG 1192867
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| ||| ||| | ||||| | || || || | ||| | ||||||||| |||
Sbjct 1192866 GCCTTCACATTCTCAATCGTATCGGAAGGCTCGACCTCCAAAGTAATGGTCTTGCCAGTC 1192807
Query 64421 AAAGTTTTTACGAAAATTTGCATTTTAAT 64449
|| || || || || || |||||||| ||
Sbjct 1192806 AAGGTCTTCACAAAGATCTGCATTTTGAT 1192778
Score = 122 bits (134), Expect = 9e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| | |||| |||||||| || || ||||||||||| | | ||||| ||||
Sbjct 1194363 AGCACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCGGACAGAGTGCGTCCGTCC 1194304
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | ||||||||||||| | || | ||||||||||| || |||||||| || || ||
Sbjct 1194303 TCCAACTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCC 1194244
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| ||||| ||| ||| ||| | || ||| | ||||| || | || | ||||
Sbjct 1194243 TGGATTTTAGCCTTCACATTCTCAATGGTGTCAGATGGCTCCACCTCCAGTGTAATGGTC 1194184
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| || | || || ||||| ||||||||
Sbjct 1194183 TTGCCAGTTAGGGTCTTCACGAAGATTTGCAT 1194152
Score = 118 bits (130), Expect = 1e-21
Identities = 148/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| |||||||| ||||| |||||||| || | | ||| || | || |||||||||
Sbjct 1193670 TGAAGGGTCGATTCCTTTTGGATGTTGTAGTCGGATAGGGTTCGTCCATCCTCAAGCTGC 1193611
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
||||||||| |||| | |||||||| || || ||||| || || || || || || ||
Sbjct 1193610 TTGCCGGCAAAAATCAATCGCTGCTGATCTGGGGGAATGCCCTCCTTGTCCTGAATCTTG 1193551
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| ||| ||| | |||||| | || || || | ||| | ||| || |||||
Sbjct 1193550 GCCTTCACATTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTTTTTCCGGTT 1193491
Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443
|| || || ||||| ||||||||
Sbjct 1193490 AAGGTCTTCACGAAGATTTGCAT 1193468
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | ||| || | |||| || || || || || |||||||| || |
Sbjct 1193467 ACCACCTCGCAGACGAAGAACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 1193408
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| ||||| | ||||| | ||| || || || | ||||| |||||||| || |||||
Sbjct 1193407 AAGAGTGCGACCATCTTCCAACTGTTTTCCTGCGAAGATGAGACGCTGCTGATCTGGAGG 1193348
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|||||| || || || || ||||| ||| || ||| | |||||| | || ||
Sbjct 1193347 AATTCCCTCCTTGTCCTGAATTTTAGCCTTCACGTTCTCAATGGTATCAGAAGGTTCAAC 1193288
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | ||| | ||| || ||||| | || |||||||| ||||||||
Sbjct 1193287 CTCCAGAGTGATGGTTTTACCGGTAAGGGTCTTTACGAAGATTTGCAT 1193240
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
||||| || || || ||||||||||| | | || || | || || || ||||| ||
Sbjct 1193208 GTCGACTCCTTCTGGATGTTGTAATCCGACAACGTACGGCCATCCTCCAGTTGCTTACCA 1193149
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| ||||||| |||||||| || || || || ||||| || || || || || |||
Sbjct 1193148 GCAAAAATGAGACGCTGCTGATCTGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTC 1193089
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
|| ||| | |||||| | || || || | ||| | ||||||||| |||| ||
Sbjct 1193088 ACGTTCTCAATGGTATCAGAAGGTTCAACCTCCAGAGTGATGGTCTTGCCCGTCAGGGTC 1193029
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||| || |||||
Sbjct 1193028 TTCACGAAGATCTGCAT 1193012
>seq5214
Length=3698012
Score = 122 bits (134), Expect = 9e-23
Identities = 539/840 (64%), Gaps = 20/840 (2%)
Strand=Plus/Plus
Query 153672 TTGTCCACGGTAAATGCGATTGCATCCGCGGCCGGTTTAGTTCGCAAATAATACATGCCG 153731
|| |||||||| || || || | ||| || || || || |||| ||| |||||||||
Sbjct 3420201 TTATCCACGGTGAACTGAATCGCGTTCGCAGCTGGCTTTGTGCGCAGATAGTACATGCCG 3420260
Query 153732 GTTTTCAAACCACGTTTCCAAGTGTGCATGTGCACGCTAGTTAATAACGCGAAACTGGGC 153791
|| || | ||| |||||| | || | ||| | | || | | || | | |||
Sbjct 3420261 GTCTTGAGGCCAGCTTTCCAGGAGTAAAAGTGAATGGACGTCAGTTTGCCGTAGTTCGGC 3420320
Query 153792 TGCGCTATAAACACGTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCC 153851
| || | | | ||| |||||||| || || |||||||| || || ||||| || |||
Sbjct 3420321 TCTGCCACATGAATGTTGAACGACTGACTTTGGTCGATGAACGCACCACGATCTGCGGCC 3420380
Query 153852 ATGTCAATCAAGTTTTTACTGCTC----ATTTCCCACACAGTTTTGTAGACGGCTTTAAT 153907
|| | ||| | | ||| | | ||||||||||| || ||||| | | ||
Sbjct 3420381 ATTTTAAT----TGTGGACTTCACGGAGATTTCCCACACGGTCTTGTAAAGATCGCGAAC 3420436
Query 153908 GTCGTCGGGTATGCGATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCG 153967
| | ||| ||| ||||| ||||| | || | | | || || ||
Sbjct 3420437 CTTCTGGGGAATGGCCTCAATGTTCTGGATTGAACCCCTGCTGGAAATGATCTGGTTCTT 3420496
Query 153968 CATGTGGTCGTCGTACAAATTTAG-TCGACATAAATCT-TCAACCAAGTGCTGGTTAATT 154025
||| | |||||| |||||| || ||| ||| || ||||| || || ||||| |
Sbjct 3420497 CATATCGTCGTCCCACAAATCCAGCTCGGT-TAAGTCCCTCAACAAA-TGATGGTTGACC 3420554
Query 154026 ACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAAC 154085
|| || || || |||| || ||||| || || | || | ||| | ||||||||
Sbjct 3420555 ACCTGGAATTCACCGGACAGAACGCGCCGGGTGTAAATGTTAGTTGTGTAGGGCTCGAAA 3420614
Query 154086 GATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAA 154145
|||||||||||||| | |||||| || || | ||| |||||||| || |||| ||
Sbjct 3420615 GATTCGTTGTTGCCCATTATTTGGGCAGTGGATGCCGTGGGCATGGGTGCAACCAGCAGG 3420674
Query 154146 GAGTTTCGCAAACCGTGTT--TTGCAATGCGCAATTTTA-AATCTGCCCAATTCCACAAG 154202
||||| | | |||||| | ||| ||| | || | |||| ||||| ||||| |
Sbjct 3420675 GAGTTCCTGACACCGTGCTGCTTG--ATGGACTCCTTCAGTTTCTG-CCAATCCCACAGG 3420731
Query 154203 TTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCA 154262
| || || | | || |||||||||||| |||| || ||| ||| | || ||| |
Sbjct 3420732 TCCGTGGGCTTCTTGTCCCACATGTCGTACTGCAGAATTCCCTTGCTCACGGGGCTGCCC 3420791
Query 154263 CTATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCA 154322
|| | || || || | | | |||| || || |||||||| || || |
Sbjct 3420792 TCGTAGGTTTCATAGGGACCTTCGACCTGCGCCAGCTCACAGCTGGCTTCCAAGGCGCCG 3420851
Query 154323 TAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGC 154382
||||| | ||||||| || || | || || | ||||| || |||||||| ||
Sbjct 3420852 TAGTAAATGGTTTCGAATATCTGCTGATTCAAAAGACCGGCTTCCTCGCTTTCGTATGGG 3420911
Query 154383 AATCCCAATATACAAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGT 154442
|||| || | | | || || |||| || || | || | || || || | ||
Sbjct 3420912 AATCGCATGAGAATCAGGGCGTCAGCGAAACCCTGGACACCGATGCCCACCGGACGATGC 3420971
Query 154443 TTTAAATTCGA-TTCTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATT 154501
| ||||| || ||||||| | | ||| |||||| | ||||| || || || || ||
Sbjct 3420972 CTCAAATTAGATTTCTTTGTC-TCTGGCAGGGGATAAAAGTTGATGTCAATTATCTTGTT 3421030
Score = 113 bits (124), Expect = 5e-20
Identities = 168/234 (72%), Gaps = 6/234 (3%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || |||| | ||||| | || | || || || || |||||||| || || |
Sbjct 3523195 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 3523136
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
|| |||||| | ||||| ||||||||||| || | || || |||||||| || |||||
Sbjct 3523135 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 3523076
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCG--TC 64392
|||||||||||| || || | | || ||||| ||| || | |||| ||| || ||
Sbjct 3523075 AATTCCTTCTTTGTCCTG-AATCTTGGCTTTAACATTTTCGATAGTAT--CCGACGGTTC 3523019
Query 64393 CACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| || | ||| | ||||||||| || | || || ||||| || ||||| ||
Sbjct 3523018 GACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 3522965
>seq4172
Length=1033301
Score = 120 bits (132), Expect = 3e-22
Identities = 150/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300
|||| |||||||| || || ||||| ||||| | | || || |||| || ||||||
Sbjct 907448 TGAAGGGTCGATTCCTTCTGGATGTTATAATCGGACAAAGTACGTCCGTCCTCCAGCTGC 907507
Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360
|| ||||| |||| | |||||||| || || |||||||| || || || || || ||
Sbjct 907508 TTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTG 907567
Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420
||| ||| ||| | ||||| | || || || | ||| | ||||||||| |||
Sbjct 907568 GCCTTCACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCAGTC 907627
Query 64421 AAAGTTTTTACGAAAATTTGCATTTT 64446
||||| || |||||||||||||| ||
Sbjct 907628 AAAGTCTTCACGAAAATTTGCATATT 907653
Score = 98.7 bits (108), Expect = 1e-15
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || || ||||| |||||||| || | | ||||| | || || |||||||| |||
Sbjct 906998 GTGGACTCCTTTTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGCTTTCCG 907057
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
|| |||| | |||||||| || || || ||||| || || || || || || |||
Sbjct 907058 GCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC 907117
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
|| ||| | ||||| | || || || | ||| | ||||||||||||||||||
Sbjct 907118 ACGTTCTCGATGGTATCGGAAGGCTCAACCTCCAAAGTGATGGTCTTGCCGGTCAAAGTC 907177
Query 64427 TTTACGAAAATTTGCAT 64443
|| ||||| || |||||
Sbjct 907178 TTAACGAAGATCTGCAT 907194
>seq4488
Length=533506
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| ||||||| | ||||| ||||| | ||||| || || || |||||||| || |
Sbjct 135531 CCACCGCGCAGGCGGAGCACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 135472
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| |||||| | || || |||||||||||||| | || || |||||||| || || |||
Sbjct 135471 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 135412
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
|| || || || || || || || ||| ||| ||| | || || | |||||
Sbjct 135411 ATGCCCTCCTTGTCCTGAATCTTAGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACC 135352
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | || | |||||||||||| | ||||| || || || |||||
Sbjct 135351 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 135305
>seq4594
Length=2557182
Score = 96.9 bits (106), Expect = 3e-15
Identities = 224/336 (67%), Gaps = 9/336 (3%)
Strand=Plus/Minus
Query 115361 GGACTGCACGGTTTTCATGTTCACGAATTCGGCGACACTAGCAACGGCTGCACGTCCGCC 115420
|| |||||||| || ||||| ||||| ||||| |||| | ||||||||||| ||| |
Sbjct 2006700 GGTCTGCACGGATTCCATGTGCACGAGTTCGGGGACAACACCAACGGCTGCATGTCATCG 2006641
Query 115421 GGCGAGCATTTCAACCCGTTTAACCAAGATCACGGCGCACCGAACGCACCCGTCCGCCAC 115480
|| ||||||||| || | | | || || ||||| || || | |||||||
Sbjct 2006640 GGGCCGCATTTCAATCCCTACGGCAAGGAGCATGGCGCCCCCGCCGACGAGGACCGCCAC 2006581
Query 115481 GTCGGTGATCTGGGCAACGTCGAATCTGCGGGCTTCAACTCGCTCACCGACGTCAACATG 115540
| || |||||||||||| | || | | || | ||| | ||| | ||||||||
Sbjct 2006580 CTGGGCGATCTGGGCAACATTGAGGCCACTGG---CGACTGCCCCACGAAGGTCAACATC 2006524
Query 115541 ACGAGCGACT---TAATGACGTTGTACGGCCCGAACAGTGTGCTCGGCCGCAGCTTAGTG 115597
| ||||| || ||| ||| |||| | |||| | |||| |||| | | |||
Sbjct 2006523 TC---CGACTCGAGGATCACGCTGTTCGGCGCCGACAGCATCATCGGACGCACCGTGGTG 2006467
Query 115598 GTGCACGCGGACCGCGACGATCTCGGCCTTACCGATCATCCGCTAAGCAAAACCACGGGT 115657
|| ||||| || ||| ||||||||| | || ||| ||||| |||||||
Sbjct 2006466 GTCCACGCCGATGCCGATGATCTCGGCAAGGGTGGCCACGAGCTGAGCAAGTCCACGGGC 2006407
Query 115658 AACTCGGGCGGGCGCCTGGCCTGCGGCATCATCGGC 115693
||| | || | ||| | | |||||| |||| |||
Sbjct 2006406 AACGCCGGTGCTCGCATTGGATGCGGCGTCATTGGC 2006371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499610892854760
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