Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq5078 138 5e-28 >seq5078 Length=1488007 Score = 138 bits (152), Expect = 5e-28 Identities = 433/663 (65%), Gaps = 11/663 (2%) Strand=Plus/Minus Query 65943 GCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCT 66002 || || || || || |||| || | ||||| || ||||| || ||||| || || Sbjct 1314324 GCGCTGGGTATTGGTGGGTTGCCCCGTGGCCGTGTGGTGGAAATTTACGGGCCAGAAAGC 1314265 Query 66003 TCAGGGAAGTCAACGTTGTGC-CTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAA 66061 || || || | ||| | ||| || || || | || | || || ||| ||||||| Sbjct 1314264 TCTGGTAAAACCACGCT-TGCGCTGCATGCCATTGCAGAAGCACAAAAGCGTGGTGGCAC 1314206 Query 66062 CGCCGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGT 66121 || | || || ||||| ||| | | || || | || ||| ||| || || Sbjct 1314205 TTGTGCTTTTATTGATGCCGAGCATGCGTTGGATCCCGGTTATGCCAAAAAGCTGGGCGT 1314146 Query 66122 GGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGT 66181 |||||| || || || || | |||||||| | || || ||||| |||| || | Sbjct 1314145 GGATGTAGATAACCTGCTGATCAGCCAGCCAGATGCGGGTGAACAGGCGTTGGAAATTGC 1314086 Query 66182 TGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCT 66241 || ||||| || |||| || | | | || || || ||| || || || Sbjct 1314085 AGATACACTCGTGCGATCCGGCGCTATTGACGTTTTGGTGGTAGATAGTGTTGCAGCACT 1314026 Query 66242 GGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCG 66301 ||||||||| || || || ||||| ||||| || || || || ||||| ||||| || Sbjct 1314025 GGTGCCGCGCGCAGAACTGGAAGGAGACATGGGCGATAGCCATGTTGGCCTTCATGCGCG 1313966 Query 66302 CCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAACACGCTCAC 66361 ||||| ||||| |||| ||||| || || ||| | || || |||| || || | Sbjct 1313965 TTTGATGAGCCAGGCTTTGCGTAAGCTTACGGGTACGGTGGCACGCTCCAATACTCTGAT 1313906 Query 66362 CCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCA--ACGTGGGCTACGGCCCGAATGAG 66419 | | |||| ||| | ||| ||| || || | || | || ||| || Sbjct 1313905 GATTTTCCTGAACCAGATCCGCCTGAAAATTGGTGTGATGTTTGGTAAT--CCG---GAA 1313851 Query 66420 ACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGG 66479 || ||||| |||||||| || ||| ||||| | || |||||||||||| | ||| | Sbjct 1313850 ACAACCACGGGTGGTAATGCCCTGAAGTTCTATTCTTCCGTGCGTATGGATATTCGCCGC 1313791 Query 66480 ATCGCCACCGAGAAGGAAGGCGATGAGGCTGTC-GGCAACCGCACGCGCGTGAAGGTTGT 66538 |||| | ||||| ||||||| || | || || | |||||||| |||||||| Sbjct 1313790 ATCGGGTCTATCAAGGACAAGGATGAGG-TGACAGGTAATCAGACGCGCGTAAAGGTTGT 1313732 Query 66539 CAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGG 66598 || |||||| ||||||| || ||| |||| || ||| ||| | |||||||| || Sbjct 1313731 TAAAAACAAGATGGCGCCACCTTTCCGTCAGGTAGAATTTGATATCATGTACGGCGAAGG 1313672 Query 66599 CAT 66601 ||| Sbjct 1313671 CAT 1313669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242454356718668