Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04] 5,429 sequences; 171,267,669 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq5214 374 9e-99 >seq5214 Length=3698012 Score = 374 bits (414), Expect = 9e-99 Identities = 1046/1587 (66%), Gaps = 65/1587 (4%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | ||||||| || ||||| || || |||||||| || |||| | || | | Sbjct 3422035 TACAACTACTTTGGTTTTAAAACCCTCGAACGTTCGTACCTGCTGAAGAGAAACGGAAAG 3421976 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 | ||||||| ||||| || ||||||||||||| || ||||| || || || | ||| Sbjct 3421975 ATCGCCGAGCGTCCGCAGCACATGCTGATGCGCGTGGCGATCGGAATCCATGGAGAGGAC 3421916 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAG-----ACATGCGGGACAAGAGGTAT---ACCA 93889 || ||| ||||| | | ||| || ||| | || ||| ||| Sbjct 3421915 AT--CGA------TGCGGCCGTGGAGACCTACAACCTGCTGTCGGAGCGGTTCTTCACCC 3421864 Query 93890 TGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCC 93949 ||| | || || || || ||| | || ||| || |||| ||||| |||| Sbjct 3421863 ACGCCTCGCCAACGCTTTTTGCCGCAGCCACAAATCGGCCGCAACTGTCGTCGTGCTTCC 3421804 Query 93950 TGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGA 94009 || |||| | | ||||||||| ||| || || ||| | | | | || ||||| Sbjct 3421803 TGCTGACCATGACGGCCGACTCGATCGAGGGCATCTTCAA--GTCGGTGGAACAGTGCGC 3421746 Query 94010 CC--ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGG 94067 | ||||| |||| || || || || || | | |||||| | | || |||| ||| Sbjct 3421745 CATGATCTCGAAATCGGCAGGAGGCATTGGACTGAATGTCCATTGCATCCGGGCCAAGGG 3421686 Query 94068 TTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTT 94127 ||| |||| |||| || |||||||||||||| ||||| || || |||||| ||||||| Sbjct 3421685 CACCTCCATCTGCGGCACGAATGGCACCTCCAATGGCCTGGTACCCATGCTCAGGGTCTT 3421626 Query 94128 CAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGT 94187 |||||| | ||| || |||||||| |||||||| || | | || ||| | ||||| | Sbjct 3421625 CAACAATGTGGCACGTTACGTGGATCAGGGTGGCGGCAAGCGGCCCGGTGCCTTCGCCAT 3421566 Query 94188 CTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGG 94247 || || |||||||||||| |||||||| | ||| | || || |||||| ||| Sbjct 3421565 TTACCTGGAGCCCTGGCACTCGGACGTGTTCGAGTTCCTGGAACTCAAGAAGAACACCGG 3421506 Query 94248 CAACGATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTT 94304 ||| || ||||| | ||| | || ||||||||||| |||||| | || || ||||| Sbjct 3421505 CAAGGA---GGAGAATCGCGCCCGCGATCTCTTCTACGCCCTCTGGATACCCGATCTTTT 3421449 Query 94305 TATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGG 94364 ||||||||||||||| ||| | |||| || | ||||| | |||| ||||| Sbjct 3421448 CATGAAACGCGTCGAGGCCAACGGGGACTGGTCGCTGATGTGTCCGCACAAATGCCCCGG 3421389 Query 94365 ACTGTCCGACGTTTGTG--GATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAG 94422 ||| ||| || || | ||| | | || ||| | |||| | | ||||| | || Sbjct 3421388 CCTGCACGATGTGTGGGGCGAT-GAG-TTCGAAAAGCTGTACACGCAATACGAGCAGGAG 3421331 Query 94423 GGCAAGGC---CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTA 94479 ||| || | ||| ||| | | || | ||||| ||| | || Sbjct 3421330 GGCCGTGCGAACCGGACGGTCA---AGGCACAGTCCTTGTGGTTCGCCATCATTGAGTCG 3421274 Query 94480 CAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAAC 94539 |||||||| || || | || ||||| |||||||||| || |||| ||| |||| Sbjct 3421273 CAGGTGGAAACCGGCAATCCGTACATGCTGTTCAAGGATTCGTGCAACAGGAAGAGCAAC 3421214 Query 94540 CAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACT 94599 |||||| | | || |||||| || ||| |||||||||| || || |||||| | Sbjct 3421213 CAGCAGAATGTTGGCACCATCAAGTGCAGCAATTTGTGCACCGAAATCGTTGAGTATTCC 3421154 Query 94600 TCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGA 94659 | |||||||||||||| ||||| ||||||| ||||| ||| || ||||| | Sbjct 3421153 GCGCCGGACGAGATTGCAGTGTGCAACCTGGCATCCATTGCCCTCAACATGTTCGT-CAC 3421095 Query 94660 GATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGG 94719 | || | | | | || || | ||| |||| || | | | | Sbjct 3421094 G--CCCGAGAAGACGTATGATTTCAAAAAACTGAAGGA---AGTCACC---------AAG 3421049 Query 94720 ATGGT---CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCG 94776 | ||| | || || |||| | |||| |||| ||||| || ||| | || ||| | Sbjct 3421048 ACGGTTACCAGAAATCTCAACAAGATAATTGACATCAACTTTTATCCCCTGCCAGAGACA 3420989 Query 94777 GAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCG 94836 |||| || || ||| |||||| || | |||||||| |||||||||||||| ||||| Sbjct 3420988 AAGAAATCTAATTTGAGGCATCGTCCGGTGGGCATCGGTGTCCAGGGTTTCGCTGACGCC 3420929 Query 94837 CTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATA 94896 ||| | | ||||| | || ||||| | || || | ||||||| | | ||| Sbjct 3420928 CTGATTCTCATGCGATTCCCATACGAAAGCGAGGAAGCCGGTCTTTTGAATCAGCAGATA 3420869 Query 94897 TTCGAAAGCATTTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGG 94955 ||||||| |||||| ||||| ||| | ||| | | | || || | ||| ||| | Sbjct 3420868 TTCGAAACCATTTACTACGGCGCCTTGGAAGCCAGCTGTGAGCTGGCGCAGGTCGAA--- 3420812 Query 94956 CGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACC 95014 || || | ||| | | || || |||| || | |||| ||| | |||| |||| Sbjct 3420811 -GGTCCCTATGAAAC-CTACGAGGGCAGCCCCGTGAGCAAGGGAATTCTGCAGTACGACA 3420754 Query 95015 TCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGG--GAAGCTCTACGCGCTGATGTTAT 95072 | |||| ||||||| ||| |||| || ||| ||| || | | | | | | Sbjct 3420753 TGTGGGACAAGAAGCCCACGGACCTGTGGGATTGGCAGAAACTGAAGGAGTCCA--TCAA 3420696 Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 | |||||||| | ||| | ||||| || || |||||||||||||| ||||| || || Sbjct 3420695 GCAGCACGGTGTCAGGAACTCCCTGCTGGTTGCACCCATGCCCACGGCATCCACTGCCCA 3420636 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 || | ||||||||||| || ||||| |||| ||| | ||| | |||| | |||| || Sbjct 3420635 AATAATGGGCAACAACGAATCTTTCGAGCCCTACACAACTAACATTTACACCCGGCGCGT 3420576 Query 95193 GCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGG 95252 || |||| ||||||| || ||||| | || | | ||||| | || |||| Sbjct 3420575 TCTGTCCGGTGAATTCCAGGTGGTCAACCATCATTTGTTGAGGGACTTAACCGAGCTGGA 3420516 Query 95253 TGTGTGGGGTGACAAGGTCAAGAACCA 95279 | |||||| ||| | | |||||||| Sbjct 3420515 TTTGTGGGACGACGATATGAAGAACCA 3420489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494689626846840