Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20elegans_20[refseq_20GCF_5F000224195.1_202013-03-04]
5,429 sequences; 171,267,669 total letters
Query= NC_011273.1
Length=164602
Score E
Sequences producing significant alignments: (Bits) Value
seq5079 89.7 5e-13
seq4704 89.7 5e-13
seq4161 89.7 5e-13
seq30 84.2 2e-11
>seq5079
Length=1084440
Score = 89.7 bits (98), Expect = 5e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||||| ||||||| |||||||||| ||||||||||||||| |||||| |||||||||
Sbjct 806934 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 806993
Query 92675 CCCACTCCCGCCACTAG 92691
|| | ||||| || ||
Sbjct 806994 CCTGCCCCCGCAACCAG 807010
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||||| ||||||| |||||||||| ||||||||||||||| |||||| |||||||||
Sbjct 1002477 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 1002536
Query 92675 CCCACTCCCGCCAC 92688
|| | ||||| ||
Sbjct 1002537 CCTGCCCCCGCAAC 1002550
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||||| ||||||| |||||||||| ||||||||||||||| ||| | | |||||||||
Sbjct 270 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGGTTCAAAT 329
Query 92675 CCCACTCCCGCCAC 92688
|| | ||||| ||
Sbjct 330 CCTATCCCCGCAAC 343
>seq4704
Length=42152
Score = 89.7 bits (98), Expect = 5e-13
Identities = 66/77 (86%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||||| ||||||| |||||||||| ||||||||||||||| |||||| |||||||||
Sbjct 40101 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 40042
Query 92675 CCCACTCCCGCCACTAG 92691
|| | ||||| || ||
Sbjct 40041 CCTGCCCCCGCAACCAG 40025
>seq4161
Length=32127
Score = 89.7 bits (98), Expect = 5e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||||| ||||||| |||||||||| ||||||||||||||| |||||| |||||||||
Sbjct 31864 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGCCGCAGGTTCAAAT 31805
Query 92675 CCCACTCCCGCCAC 92688
|| | ||||| ||
Sbjct 31804 CCTGCCCCCGCAAC 31791
>seq30
Length=443100
Score = 84.2 bits (92), Expect = 2e-11
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 92615 GCGGGGTAGAGCAGCTCGGTAGCTCGCCAGGCTCATAACCTGGAGGCCGTGGGTTCAAAT 92674
||||||| ||||||| |||||||||| ||||||||||||||| ||| | | |||||||||
Sbjct 154591 GCGGGGTGGAGCAGCCCGGTAGCTCGTCAGGCTCATAACCTGAAGGTCATAGGTTCAAAT 154650
Query 92675 CCCACTCCCGCCAC 92688
|| | ||||| ||
Sbjct 154651 CCTATCCCCGCAAC 154664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 526562663716080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |